| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4500 |
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| Symbol | |
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| ID | 5612537 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5503606 |
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| End bp | 5505009 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935477 |
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| Product | methyl-accepting chemotaxis protein |
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| Protein accession | YP_001476230 |
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| Protein GI | 157377630 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000193555 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAGAAG TCGCTTTCCG TTGGATAGAC AAGTTTCTGG TAAATGTAAA ACTGCAGGAA
AACTTTTTAA TCCTGTTTTT CTCTTCGTTG CTGGCAATAC TCATCGTTAG CCTAACCTTA
ATCAGTGCCG AACAAGATCA GAAAAATAAG CAGTTAAAGC AAGAGATTAA CCTAGTATCG
AATCTGATAT CCAAAACAGA TTTAAGTCAA AGTGAGCTGT CCGGCATTCT CGCTAACAGC
AACCTCCAGA TTGGAAGTCA GGGGCAATTC GCCACAACAG TTCCCAATAC AAACGTGACT
TTAAGTGCCA AAGCGCTACC GGGATTTTTC TCTACTTTAG GTCTGGGGCA TTACGCCATT
ATCCTGTTCT GTATCGGCCT CATCATCATG AGCTCCTATT ACATTAAGAC ATTTATGGGT
GGTGCACTCT TTAATATGTA CGATGCTCTT AAGCGTCTGG CCGATGGCGA TCTCGCATCC
CGGATTGCAT ATGCGCCGGC GCGTAATGAA TTCAACCTTA TTGCTCAGAC GATCGATAGA
GTTTCGGAGC GTGAACATCT GTTGGTGAAA ACCACTCAGG AAGCGATCGC CCTTATTCAA
CAGATCAGCT CTCAGTTACG TCAACGCAGT AATGAAAACG CCAAATTAAC CAGTCAACAG
CAGGAGCGTA TCGATTCACT GGCCAGTGCA ACCGAACAGA TGGCCTCCTC TATTCGTGAG
GTGGCGAGTC ATGCCCATGA CTCTTCGACT CAAACCAGTG AGGCTACGCA AACGGCAACA
TTAGGACTAT CTCAGGTTGA GTCGACTCAG GGAGCGATTA AAAAGCTGAC AGCTGAAATC
AATGCGGCAT CCGGTGCCGT GGCAGATTTG GACTCGAGTG CCTCACAGAT CGATGATGTG
GTTTCTACCA TTAACGCCAT CTCTCAGCAG ACAAACCTGC TTGCGCTTAA CGCCGCTATC
GAAGCAGCCC GAGCCGGTGA ACAGGGACGA GGTTTTGCCG TTGTCGCAGA TGAAGTTCGT
ACCCTGGCCG GGCGAACACA GACTGCCACA GTAGAAATTC AGAAGATGAT CGAGGCGCTG
CAGAGTAACA GTCAGGGCCT AATCACTGTG ATTGAACAGA CAGTCGCCGA AGCCGAAACC
AGTGAGACAC TCATGGAGTC GGTGAGTAAG AACATCAGCG AAATATCGGG CCAAAACCAA
TATATCGCGG ATCGTAGTAT TGAAATTGCC GCAGCAGCCG AAGAGCAAGG CGCCGTGGCA
GACAATATCG CCTCCGATGT GGATCTGGTG CGAGCTGGTT CTGAAAGTGT TGCCGTAATG
GTTACTCAGA CAGCCAGCGA GATAGAATCC TTAAACAGCC AAGCCGATGT GCTGGAAAAT
CTGATGAAAG ATCTTAAGGT CTGA
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| Protein sequence | MKEVAFRWID KFLVNVKLQE NFLILFFSSL LAILIVSLTL ISAEQDQKNK QLKQEINLVS
NLISKTDLSQ SELSGILANS NLQIGSQGQF ATTVPNTNVT LSAKALPGFF STLGLGHYAI
ILFCIGLIIM SSYYIKTFMG GALFNMYDAL KRLADGDLAS RIAYAPARNE FNLIAQTIDR
VSEREHLLVK TTQEAIALIQ QISSQLRQRS NENAKLTSQQ QERIDSLASA TEQMASSIRE
VASHAHDSST QTSEATQTAT LGLSQVESTQ GAIKKLTAEI NAASGAVADL DSSASQIDDV
VSTINAISQQ TNLLALNAAI EAARAGEQGR GFAVVADEVR TLAGRTQTAT VEIQKMIEAL
QSNSQGLITV IEQTVAEAET SETLMESVSK NISEISGQNQ YIADRSIEIA AAAEEQGAVA
DNIASDVDLV RAGSESVAVM VTQTASEIES LNSQADVLEN LMKDLKV
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