More than 300 homologs were found in PanDaTox collection
for query gene Sfri_1416 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  100 
 
 
481 aa  967    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  66.18 
 
 
484 aa  624  1e-177  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  65.98 
 
 
484 aa  622  1e-177  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  66.18 
 
 
484 aa  622  1e-177  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  66.6 
 
 
484 aa  621  1e-177  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  68.4 
 
 
481 aa  622  1e-177  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  65.98 
 
 
484 aa  622  1e-177  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  66.39 
 
 
484 aa  619  1e-176  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  66.39 
 
 
484 aa  619  1e-176  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  65.98 
 
 
484 aa  589  1e-167  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  64.45 
 
 
482 aa  582  1.0000000000000001e-165  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  61.54 
 
 
482 aa  570  1e-161  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_009901  Spea_1637  methyl-accepting chemotaxis sensory transducer  60.71 
 
 
482 aa  556  1e-157  Shewanella pealeana ATCC 700345  Bacteria  normal  0.301948  n/a   
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  59.79 
 
 
479 aa  548  1e-154  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  60.29 
 
 
482 aa  534  1e-150  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  39.83 
 
 
473 aa  335  9e-91  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_2902  methyl-accepting chemotaxis sensory transducer  41.49 
 
 
479 aa  335  2e-90  Shewanella loihica PV-4  Bacteria  normal  0.56843  normal  0.473301 
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  42.03 
 
 
478 aa  331  2e-89  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
479 aa  330  5.0000000000000004e-89  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  41.12 
 
 
476 aa  327  2.0000000000000001e-88  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  40.29 
 
 
480 aa  328  2.0000000000000001e-88  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3066  chemotaxis sensory transducer  39.29 
 
 
488 aa  321  1.9999999999999998e-86  Shewanella denitrificans OS217  Bacteria  normal  0.301784  n/a   
 
 
-
 
NC_008321  Shewmr4_1807  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
505 aa  276  8e-73  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
505 aa  276  8e-73  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  38.27 
 
 
505 aa  273  7e-72  Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_009092  Shew_2217  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
500 aa  271  2e-71  Shewanella loihica PV-4  Bacteria  normal  0.802205  normal  0.183546 
 
 
-
 
NC_004347  SO_2083  methyl-accepting chemotaxis protein  38.27 
 
 
505 aa  271  2e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_1954  putative methyl-accepting chemotaxis sensory transducer  38.84 
 
 
504 aa  271  2e-71  Shewanella amazonensis SB2B  Bacteria  normal  0.0290306  normal 
 
 
-
 
NC_011663  Sbal223_2420  methyl-accepting chemotaxis sensory transducer  38.1 
 
 
506 aa  269  5.9999999999999995e-71  Shewanella baltica OS223  Bacteria  normal  0.0671416  hitchhiker  0.00255163 
 
 
-
 
NC_009997  Sbal195_1906  methyl-accepting chemotaxis sensory transducer  38.1 
 
 
506 aa  269  8.999999999999999e-71  Shewanella baltica OS195  Bacteria  hitchhiker  0.00117287  normal 
 
 
-
 
NC_009665  Shew185_1899  methyl-accepting chemotaxis sensory transducer  38.1 
 
 
506 aa  269  1e-70  Shewanella baltica OS185  Bacteria  hitchhiker  0.000132488  n/a   
 
 
-
 
NC_009052  Sbal_1872  methyl-accepting chemotaxis sensory transducer  38.27 
 
 
506 aa  269  1e-70  Shewanella baltica OS155  Bacteria  normal  0.0204582  n/a   
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  39.16 
 
 
500 aa  266  5.999999999999999e-70  Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_009438  Sputcn32_1827  methyl-accepting chemotaxis sensory transducer  38.51 
 
 
502 aa  264  2e-69  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00626539  n/a   
 
 
-
 
NC_009831  Ssed_2599  methyl-accepting chemotaxis sensory transducer  37.09 
 
 
501 aa  263  4e-69  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000558383  normal 
 
 
-
 
NC_009901  Spea_2471  methyl-accepting chemotaxis sensory transducer  35.73 
 
 
499 aa  254  3e-66  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4500  methyl-accepting chemotaxis protein  35.09 
 
 
467 aa  239  5.999999999999999e-62  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000000193555 
 
 
-
 
NC_009783  VIBHAR_02368  hypothetical protein  37.39 
 
 
472 aa  239  5.999999999999999e-62  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  37.97 
 
 
467 aa  239  1e-61  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_008345  Sfri_3852  methyl-accepting chemotaxis sensory transducer  32.86 
 
 
467 aa  211  2e-53  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.38 
 
 
564 aa  194  3e-48  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  37.17 
 
 
646 aa  186  6e-46  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_009438  Sputcn32_0513  methyl-accepting chemotaxis sensory transducer  37.54 
 
 
542 aa  184  4.0000000000000006e-45  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  30.14 
 
 
653 aa  177  4e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  32.96 
 
 
541 aa  177  5e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  32.95 
 
 
634 aa  176  9e-43  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  36.86 
 
 
533 aa  174  2.9999999999999996e-42  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  30.81 
 
 
653 aa  172  1e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  36.27 
 
 
572 aa  172  1e-41  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  37.86 
 
 
636 aa  171  2e-41  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  34.28 
 
 
559 aa  171  2e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  31.27 
 
 
568 aa  170  5e-41  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  30.07 
 
 
640 aa  170  6e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  32.04 
 
 
634 aa  169  9e-41  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_3492  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.26 
 
 
626 aa  169  1e-40  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0712  chemotaxis sensory transducer  33.94 
 
 
541 aa  169  1e-40  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.0000566108  n/a   
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  31.96 
 
 
541 aa  167  4e-40  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
634 aa  167  4e-40  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2111  methyl-accepting chemotaxis sensory transducer  34.24 
 
 
572 aa  167  5e-40  Marinobacter aquaeolei VT8  Bacteria  normal  0.138456  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
541 aa  165  1.0000000000000001e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  31.92 
 
 
543 aa  166  1.0000000000000001e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0962  methyl-accepting chemotaxis protein  32.52 
 
 
643 aa  164  2.0000000000000002e-39  Vibrio cholerae O395  Bacteria  hitchhiker  0.000917898  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  33.64 
 
 
642 aa  164  3e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_008577  Shewana3_3924  methyl-accepting chemotaxis sensory transducer  31.62 
 
 
527 aa  164  3e-39  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  32.88 
 
 
640 aa  164  3e-39  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  31.07 
 
 
642 aa  164  4.0000000000000004e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  32.07 
 
 
638 aa  164  4.0000000000000004e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  31.09 
 
 
619 aa  163  5.0000000000000005e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  32.97 
 
 
548 aa  163  7e-39  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_008322  Shewmr7_3799  methyl-accepting chemotaxis sensory transducer  32.75 
 
 
527 aa  163  8.000000000000001e-39  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.04 
 
 
626 aa  162  1e-38  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0226  methyl-accepting chemotaxis sensory transducer  32.4 
 
 
527 aa  162  1e-38  Shewanella baltica OS223  Bacteria  normal  normal  0.16836 
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  31.13 
 
 
541 aa  162  1e-38  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  30.92 
 
 
541 aa  162  1e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_008321  Shewmr4_3728  methyl-accepting chemotaxis sensory transducer  32.75 
 
 
527 aa  162  1e-38  Shewanella sp. MR-4  Bacteria  normal  normal  0.436185 
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  33.15 
 
 
560 aa  162  2e-38  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_008463  PA14_29800  putative chemotaxis transducer  35.62 
 
 
561 aa  162  2e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.00431462  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  31.04 
 
 
629 aa  161  2e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2548  putative chemotaxis transducer  35.62 
 
 
561 aa  161  2e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  0.271227  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  36.04 
 
 
533 aa  161  2e-38  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.04 
 
 
533 aa  161  2e-38  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  32.88 
 
 
712 aa  161  3e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  34.62 
 
 
552 aa  161  3e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009654  Mmwyl1_0341  methyl-accepting chemotaxis sensory transducer  33.89 
 
 
544 aa  160  3e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  33.14 
 
 
542 aa  161  3e-38  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_4196  methyl-accepting chemotaxis sensory transducer  34.08 
 
 
552 aa  161  3e-38  Shewanella pealeana ATCC 700345  Bacteria  normal  0.14959  n/a   
 
 
-
 
NC_007954  Sden_1600  chemotaxis sensory transducer  30.4 
 
 
538 aa  160  3e-38  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00759873  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  30.58 
 
 
541 aa  160  4e-38  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  33.05 
 
 
547 aa  160  4e-38  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  31.37 
 
 
633 aa  160  4e-38  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  34.58 
 
 
543 aa  160  4e-38  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_4113  methyl-accepting chemotaxis sensory transducer  32.46 
 
 
527 aa  160  4e-38  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_4233  methyl-accepting chemotaxis sensory transducer  31.28 
 
 
525 aa  160  5e-38  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000524679 
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  31.77 
 
 
552 aa  160  6e-38  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  31.77 
 
 
552 aa  160  6e-38  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  33.96 
 
 
564 aa  160  6e-38  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  32.34 
 
 
713 aa  159  7e-38  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_002939  GSU2942  methyl-accepting chemotaxis protein  31.59 
 
 
544 aa  159  8e-38  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  32.37 
 
 
681 aa  159  1e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  31.63 
 
 
540 aa  159  1e-37  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>