Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_3139 |
Symbol | |
ID | 5107461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 3473919 |
End bp | 3475841 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640504395 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001188624 |
Protein GI | 146308159 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.753261 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.0120166 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACACCT GGTTTGCCAA CCTCAGCGTC ACCCGCAAGC TCGCGCTCGG CTTCGGCCTG GTGCTGGCCC TTACCCTGGC GCTGGCCTGG ACCGCCTGGA GCGGCCTGGG CAGCGTCATC CAGCGCAGCA CCTGGATGAG CGAGATCTCC CAGCTCAACA CCACCCTGAC CAACCTGCGC ATCGCCCGTC TGCAGTTCAT GCTGGCCAAG GGCGACGCCC CCAGCAGCGA GCGGCTGCTG ACCAACCTCG ACATCTATCT GCAGCAGCAG AAGAAGCTGC TCGGCACCTT CACCAACCCG GTGAACGTCA AGCTGCTGCA GGAGCAGGAC CGCTACAACC AGGACTACCA GCGCTCGCTG GGCGGCATGC GTGCCGCCTA CGCCGCGGCC GACGAGGCGC GGCGCAAGGT GCTGGCGGAA GATCAGCAGC TCGGCGAACT GCTCGCCGCC ATGCAGCGCA GCGTGCAGCT GCTGCCGGAA TACGACAGCA GCCGTTTCGC CCAACTGCAG GCGCTGACCC ACACGCAGGC CGAACTGCTG CGTCTGCGCT ACCTGCTCGA GCGTTACGAG AGCACCCCCG ATGCCCAGAC CGAGCAAGCC CTGGCCGAGC GCATCGCCGC TGCCCGCGCC AGCCTCGGCG CACTGCAGCA GGCCTTCGGT AGCGCCCAGC AGGATGCGGT GCAACGCATC TCCGCGGCGC TGGGCCAGTT CGAGCAGACC ATGCAGGCGT TCAAGAACGC CACCGCCGAC ATCGCCCGCA CCCGCCAGGA GATGACCGAC CAGCAGGGCG AGATCGTGCG CATCAGCGAG GCGCTGTACA AGTTCCAGAT GGAGCGCATG GCCATCGAGA GCGCCCAGGC GCGCAGCCTG CAGATCGGTG CCACGCTGCT GGCCATGCTC TTCGGCGTGC TGGCCGCGTG GATCATCACC CGCCAGATCA CCCGTCCGCT GCAGGACACC CTGGGCGCGG TGCAGCGCAT CGCCGATGGC GACCTGACCG CCAGCGTGCG GGTCGACCGT CGCGACGAGA TGGGCCAGCT GCAGCATGGC ATCCAGCACA TGGCCACGAC CCTGCGCGAG CTGATCGGCG GCATCCGCGA CAGCGTCACC CAGATTGCCA GCGCTGCCGA GGAGCTGTCG GCCGTCACCG AGCAGACCAG CGCCGGTGCC AACAGTCAGA AGAGCGAGAC CGACCAGGTG GCCACCGCCA TGCACGAGAT GTCGGCCACC GTGCAGGAAG TGGCGCGCAA CGCCGAGCAG GCCTCGCAGG CGGCCAACGA CGCCGACGGC CAGGCACGCC TGGGCGATCA GGTGGTGGCC GAGGTGATCG TGCAGATCGA ACGCCTGGCC GCCGAGGTCA GCCGCTCCAG CGAGGCGATG CACGGCCTGC AGCAGGAGAG CGACAAGATC GGCAGCGTGA TGGACGTGAT CAAGTCGGTG GCCGAGCAGA CCAACCTGCT GGCGCTCAAC GCGGCCATCG AGGCGGCGCG TGCCGGCGAG GCGGGGCGTG GCTTCGCCGT GGTCGCCGAC GAGGTGCGCG GCCTGGCGCA GCGCACGCAG AAATCCACCG AGGAGATCGA GGCGCTGATC GCCGGCCTGC AGAGCGGTAC CCAGCAGGTG GCGGCGGTGA TGCGCAACAG CCGCAACCTC ACCGACAGCA GCGTCGAGCT GACGCGCAAG GCCGGCGACT CGCTGGGCAG CATCACCCTG GCGGTGTCCA ACATCCAGTC GATGAACCAG CAGATCGCTG CCGCCGCGGA AGAGCAGAGC GCGGTGGCCG AGGAGATCAG CCGCAGCATC CTCAGCGTGC GCGACGTCTC CGAGCAGACC GCCACCGCCA GCGACGAGAC GGCCAAGTCC TCGGCCGAAC TGGCGCGTCT GGGCGGGCAG CTGCAGGCGA TGGTCAGCCG CTTCCGCGTG TAG
|
Protein sequence | MNTWFANLSV TRKLALGFGL VLALTLALAW TAWSGLGSVI QRSTWMSEIS QLNTTLTNLR IARLQFMLAK GDAPSSERLL TNLDIYLQQQ KKLLGTFTNP VNVKLLQEQD RYNQDYQRSL GGMRAAYAAA DEARRKVLAE DQQLGELLAA MQRSVQLLPE YDSSRFAQLQ ALTHTQAELL RLRYLLERYE STPDAQTEQA LAERIAAARA SLGALQQAFG SAQQDAVQRI SAALGQFEQT MQAFKNATAD IARTRQEMTD QQGEIVRISE ALYKFQMERM AIESAQARSL QIGATLLAML FGVLAAWIIT RQITRPLQDT LGAVQRIADG DLTASVRVDR RDEMGQLQHG IQHMATTLRE LIGGIRDSVT QIASAAEELS AVTEQTSAGA NSQKSETDQV ATAMHEMSAT VQEVARNAEQ ASQAANDADG QARLGDQVVA EVIVQIERLA AEVSRSSEAM HGLQQESDKI GSVMDVIKSV AEQTNLLALN AAIEAARAGE AGRGFAVVAD EVRGLAQRTQ KSTEEIEALI AGLQSGTQQV AAVMRNSRNL TDSSVELTRK AGDSLGSITL AVSNIQSMNQ QIAAAAEEQS AVAEEISRSI LSVRDVSEQT ATASDETAKS SAELARLGGQ LQAMVSRFRV
|
| |