| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1664 |
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| Symbol | |
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| ID | 5610384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1992640 |
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| End bp | 1994088 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932534 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001473403 |
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| Protein GI | 157374803 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.587548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA TTGAATTTAG AAAAATTGAT GCGCTGATGA TCAAGCTCAG CCTGAACGGA
AAGTTTTTTG TGCTTTGTGC GTTAGTTGCC GTCATTACCA CAAGCATAGC CTTGGTGAAT
TTAAATTATG CTAAGCAAAA TGCGGCCGAC AGCTCTCTGG CAAGAGCACA GGCAATGGTC
GATAGTTTTG CGAAAGTCGC CTCGAATCAA AACCTGAGCG GGAATGATTT GAGAACATTT
GCGGATCAGC AAGGCTTGCG CCTCACTGGT CAGATGAAGG CTTATCGTCA GGGTGAGCAG
GTGAGCGTCG CTGCGCCCGT GGGTCGTGAT TACCTTCAAT TAGATGTAAA TGTGAAGAAG
TGGGAAAAAC AGGCACTATC TGATGCGAGC ATGATGTTGT GGGTTGCTCT GATAGGATTA
TTACCGCTTT TCCAGCTAAG TTACTGGACA TCGACCTCAC TCGGTGGCGG TTTATGGGAT
ATGTATATCG CCATAAAACG TCTGGCCGAC GGCGACCTGT CCCAGCGTCT CAATTTTTTT
GGTGTTGATG ATTTTAGTAT GATAGCCAAA GAGATAGACC GCAGTGCCGA TAATATGAGT
GAGATGGTAA CGGCGATCGG AAATAACGCG GGTACACTCG CTCAGGCAGC TGATGAGTTT
AATCAGCAAG CGAAACAGAG TGATGAGTTG ATTGGTTTCC AGCATCAGTT CCTCGATACG
GTCGCTGTTG CTATGGATCA AATGACTGCC GCTATTGAGG AGGTGTCGCG TAATGCGGCC
AATACTTCAG ATCAAACAAA AGATAACTCC AATCAGGCGG AAATGAGCAA GAAGCAGATC
TCTGAGGCCG TTGCACGTAT TTCAACCTTA GTTAATAAGA TTGATTCGGC ATCAGAATCG
GTTTCACAGC TCTCTCAAAA TGCGTCGGAG ATTGGCGCAG TGGTGACAAC CATCAATGGG
ATCTCTGAAC AGACTAATTT GCTTGCACTT AATGCGGCGA TTGAGGCTGC CAGAGCAGGT
GAACAGGGCA GAGGCTTTGC CGTGGTCGCC GATGAGGTAA GAACCTTAGC GGGACGTACT
CAACAGGCCA CCGTAGAAAT TCAATCTATG ATTGAAGGGT TACAGACGGG TTCGTCGACG
TTATCGACTG TGACCCATGA AATTGTTGAG CAGGCCGATC AGGGCCGTAA TGCGATTGTC
TCAGTGGGTG AAGATGTAGA CTCTATGGCC AAGTCTACCA ATGATGTTTT CGATATGAGT
TCTCAGATTG CGGCGTCGGC GGAAGAGCAG AGTGTTTCGG CGAGAGATAT CGCTACGCAG
CTTAATGATA TTCGTGAACA ATCTGAGACG ATTAAACAAA CGGCTCAACG TTCAGTCGCG
TTAGCCTCCG AGCTTAGCCA ATCTTCAGTG GAGCTCGAGA CTATCTTGGG ACAATACAGG
TTAGCTTAA
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| Protein sequence | MKQIEFRKID ALMIKLSLNG KFFVLCALVA VITTSIALVN LNYAKQNAAD SSLARAQAMV
DSFAKVASNQ NLSGNDLRTF ADQQGLRLTG QMKAYRQGEQ VSVAAPVGRD YLQLDVNVKK
WEKQALSDAS MMLWVALIGL LPLFQLSYWT STSLGGGLWD MYIAIKRLAD GDLSQRLNFF
GVDDFSMIAK EIDRSADNMS EMVTAIGNNA GTLAQAADEF NQQAKQSDEL IGFQHQFLDT
VAVAMDQMTA AIEEVSRNAA NTSDQTKDNS NQAEMSKKQI SEAVARISTL VNKIDSASES
VSQLSQNASE IGAVVTTING ISEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRTLAGRT
QQATVEIQSM IEGLQTGSST LSTVTHEIVE QADQGRNAIV SVGEDVDSMA KSTNDVFDMS
SQIAASAEEQ SVSARDIATQ LNDIREQSET IKQTAQRSVA LASELSQSSV ELETILGQYR
LA
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