| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4463 |
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| Symbol | |
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| ID | 5613243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5451956 |
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| End bp | 5453614 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935433 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001476193 |
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| Protein GI | 157377593 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.43301 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTTT TATCTTCATG GAGTATTAAG CAGAAGCTCA CTACTGTCAT GGTTGTTTTT
GGTTTAGCGG GATTGGTGAT ACTTACTAAT GTCATTATTA ATACCGGATT TGTTGAAGAC
AAATTTAATG AGTACGACAA AGCCGGGGTG ACCAGTCAGA AATATATATT GTCGATCAGC
CGTGATATGA ACTACTGTTC GCGTTTATCG AGAAGTATCA TGCTTGGCGA TGATTTCGAT
AAAAACTTCG GCTTATTGGA AACCCGTATT GCAGATATTT ATCGCCATTT CGAAGGACTC
GAATCCTCAT TAAGTTTAAT CAGTGAACCA GATGTAAAAG CTAACCTGAA AAAACTCGCC
TCAAATTCAA AGCAAGCGAC GAAAGCATTT CTTGAAGATG GACGTCAGCG CATGTCAAAG
CTCAGCTCGG TTGAGCGTAC TCCTGATGTG CTGCAAGCAG CCTGGACCTC CTATCGTAAA
GGCGCATCGC CATATGCCAA TAAGGCTAGG GCAAGCTTTA AAGCGCTGGT TCAGGCAGAA
GAGAGTGCAA GGAGTGATAC CCAGCATGTA GCGCTGAGCT CCATGGCCGA TATGAAGCAA
GAGCTAATCG CCATTACCCT TGTTTCATTC TTCCTGGGTG GTGTGATTTT ATTCCTCGTC
GCTCGCATGA TATTGAGCTC GGTTAAGACA CTAAATCAAT CTGTAAATAA TATAGAAAAA
AATTCAGATC TTACCCAACG TATCGAATGT AGTTCAAAAG ATGAACTCGG AGAGCTTTCG
CGCTCTTTTA ACCTTATGCT CGATAAGTTT CAAGCCAGCA TCAACAGCGT TTCAGACACT
TCACAACAGC TTGCCGATTC CGCCCAGGGC ATGGCGCAGG TGACATCAGA GACTGCGTCG
TCTGTGCAGA CACAGCAGCA TGAGCTGGAT ATGGTGGCAA CGGCGATGAA TGAGATGACT
GCTACGGTTG TGGAGGTCGC AAAAAATGCT AACGATGCCG CCGATGCCGC GGTTGAAACC
GATAACCAGT CCAAAGAGGG GTTGCAGGTT GTAACCAATA CCGTGGATAT GATTGTTGGT
CTTGCTGCAG AAATTGAGAG TGCGGCGGAG GTGATACTGG ACTTAGAAAA GGACAGTAAT
CAGATTGGTT CCATACTCGA TGTGATCAAA GGGATTGCCG AGCAGACTAA TCTGCTGGCA
CTTAATGCGG CCATTGAAGC GGCGAGAGCG GGTGAACAGG GGAGAGGCTT TGCCGTTGTG
GCTGACGAAG TCCGTACTTT AGCAAGCAGG ACACAAGCAT CGACCGAAGA GATTCAAAAG
ATGATAGAGA AGTTACAGGG TGGGGCTAAG GTGGCCGTGA GTGTCATGGC TGATAGTCGT
AAGTATGTCG ATGATAGTGT CAGCAATGCT AAATCTGCTG GTGAAGCGCT GCAGATGATC
ACTCAGTCGA TAGGCAAGAT CACCGATATG AATACTCAGA TTGCCACGGC CGCCGAGGAG
CAAAGTGCGG TATCTGAAGA GATCAATGCC AATATCGTTA ATATTAACCA TGCCGCAGAG
GAGGCTGCAC AAGGTGCTAA TTCGACTTCC AGCGAGAGTG AGAGGTTGGC CGAAATGGCC
AAGCAGTTAG AACTCCTTGT GCAGCAGTTT AAGATTTAA
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| Protein sequence | MHFLSSWSIK QKLTTVMVVF GLAGLVILTN VIINTGFVED KFNEYDKAGV TSQKYILSIS
RDMNYCSRLS RSIMLGDDFD KNFGLLETRI ADIYRHFEGL ESSLSLISEP DVKANLKKLA
SNSKQATKAF LEDGRQRMSK LSSVERTPDV LQAAWTSYRK GASPYANKAR ASFKALVQAE
ESARSDTQHV ALSSMADMKQ ELIAITLVSF FLGGVILFLV ARMILSSVKT LNQSVNNIEK
NSDLTQRIEC SSKDELGELS RSFNLMLDKF QASINSVSDT SQQLADSAQG MAQVTSETAS
SVQTQQHELD MVATAMNEMT ATVVEVAKNA NDAADAAVET DNQSKEGLQV VTNTVDMIVG
LAAEIESAAE VILDLEKDSN QIGSILDVIK GIAEQTNLLA LNAAIEAARA GEQGRGFAVV
ADEVRTLASR TQASTEEIQK MIEKLQGGAK VAVSVMADSR KYVDDSVSNA KSAGEALQMI
TQSIGKITDM NTQIATAAEE QSAVSEEINA NIVNINHAAE EAAQGANSTS SESERLAEMA
KQLELLVQQF KI
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