More than 300 homologs were found in PanDaTox collection
for query gene Sden_3066 on replicon NC_007954
Organism: Shewanella denitrificans OS217



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3066  chemotaxis sensory transducer  100 
 
 
488 aa  983    Shewanella denitrificans OS217  Bacteria  normal  0.301784  n/a   
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  67.85 
 
 
479 aa  635    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_009092  Shew_2902  methyl-accepting chemotaxis sensory transducer  69.52 
 
 
479 aa  652    Shewanella loihica PV-4  Bacteria  normal  0.56843  normal  0.473301 
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  59.88 
 
 
480 aa  551  1e-156  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  60.67 
 
 
478 aa  550  1e-155  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  61.12 
 
 
476 aa  539  9.999999999999999e-153  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  56.64 
 
 
473 aa  534  1e-150  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
484 aa  343  2.9999999999999997e-93  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
484 aa  343  4e-93  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
484 aa  342  8e-93  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
484 aa  342  1e-92  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
484 aa  337  3.9999999999999995e-91  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
484 aa  336  5e-91  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  41.32 
 
 
484 aa  335  1e-90  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
482 aa  328  1.0000000000000001e-88  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  42.59 
 
 
484 aa  324  3e-87  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  39.29 
 
 
481 aa  321  1.9999999999999998e-86  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  39.71 
 
 
482 aa  316  6e-85  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  39.5 
 
 
479 aa  315  1.9999999999999998e-84  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  40.21 
 
 
482 aa  310  4e-83  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1637  methyl-accepting chemotaxis sensory transducer  40.54 
 
 
482 aa  310  4e-83  Shewanella pealeana ATCC 700345  Bacteria  normal  0.301948  n/a   
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  39.92 
 
 
481 aa  299  9e-80  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1954  putative methyl-accepting chemotaxis sensory transducer  38.51 
 
 
504 aa  291  3e-77  Shewanella amazonensis SB2B  Bacteria  normal  0.0290306  normal 
 
 
-
 
NC_004347  SO_2083  methyl-accepting chemotaxis protein  37.06 
 
 
505 aa  276  6e-73  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2217  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
500 aa  272  8.000000000000001e-72  Shewanella loihica PV-4  Bacteria  normal  0.802205  normal  0.183546 
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
505 aa  272  1e-71  Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_008321  Shewmr4_1807  methyl-accepting chemotaxis sensory transducer  37.55 
 
 
505 aa  271  2e-71  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  37.55 
 
 
505 aa  271  2e-71  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2599  methyl-accepting chemotaxis sensory transducer  35.79 
 
 
501 aa  268  1e-70  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000558383  normal 
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  37.25 
 
 
500 aa  266  8.999999999999999e-70  Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_009052  Sbal_1872  methyl-accepting chemotaxis sensory transducer  35.94 
 
 
506 aa  265  1e-69  Shewanella baltica OS155  Bacteria  normal  0.0204582  n/a   
 
 
-
 
NC_009665  Shew185_1899  methyl-accepting chemotaxis sensory transducer  36.84 
 
 
506 aa  265  1e-69  Shewanella baltica OS185  Bacteria  hitchhiker  0.000132488  n/a   
 
 
-
 
NC_009997  Sbal195_1906  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
506 aa  264  2e-69  Shewanella baltica OS195  Bacteria  hitchhiker  0.00117287  normal 
 
 
-
 
NC_011663  Sbal223_2420  methyl-accepting chemotaxis sensory transducer  36.26 
 
 
506 aa  265  2e-69  Shewanella baltica OS223  Bacteria  normal  0.0671416  hitchhiker  0.00255163 
 
 
-
 
NC_009438  Sputcn32_1827  methyl-accepting chemotaxis sensory transducer  36.85 
 
 
502 aa  262  8e-69  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00626539  n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  35.54 
 
 
467 aa  251  2e-65  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_009831  Ssed_4500  methyl-accepting chemotaxis protein  33.6 
 
 
467 aa  242  9e-63  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000000193555 
 
 
-
 
NC_009783  VIBHAR_02368  hypothetical protein  36.23 
 
 
472 aa  242  1e-62  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_3852  methyl-accepting chemotaxis sensory transducer  34.02 
 
 
467 aa  242  1e-62  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2471  methyl-accepting chemotaxis sensory transducer  34.68 
 
 
499 aa  239  1e-61  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  33.19 
 
 
640 aa  194  4e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  37.14 
 
 
629 aa  191  2e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  36.18 
 
 
633 aa  191  2e-47  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  36.97 
 
 
541 aa  191  4e-47  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  35.08 
 
 
619 aa  187  3e-46  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  33.04 
 
 
640 aa  184  4.0000000000000006e-45  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  33.76 
 
 
639 aa  184  4.0000000000000006e-45  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  35.85 
 
 
541 aa  177  4e-43  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  36.31 
 
 
638 aa  177  5e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  35.44 
 
 
638 aa  176  9.999999999999999e-43  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
638 aa  175  9.999999999999999e-43  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
636 aa  174  1.9999999999999998e-42  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  34.19 
 
 
634 aa  174  2.9999999999999996e-42  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  35.13 
 
 
638 aa  174  3.9999999999999995e-42  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.96 
 
 
568 aa  173  5.999999999999999e-42  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  35.55 
 
 
631 aa  172  7.999999999999999e-42  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2016  methyl-accepting chemotaxis protein  39.1 
 
 
433 aa  173  7.999999999999999e-42  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000104003  n/a   
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  36.23 
 
 
626 aa  172  7.999999999999999e-42  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2678  methyl-accepting chemotaxis protein  33.79 
 
 
533 aa  172  1e-41  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.221197  n/a   
 
 
-
 
NC_013456  VEA_004525  methyl-accepting chemotaxis protein  39.1 
 
 
418 aa  171  2e-41  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  33.8 
 
 
634 aa  171  2e-41  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  33.24 
 
 
559 aa  171  2e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  39.29 
 
 
647 aa  171  2e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  37.1 
 
 
557 aa  171  3e-41  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  34.9 
 
 
640 aa  170  4e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  37.78 
 
 
564 aa  170  5e-41  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  35.71 
 
 
647 aa  170  6e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  35.13 
 
 
638 aa  170  6e-41  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  35.82 
 
 
640 aa  169  1e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_0596  methyl-accepting chemotaxis sensory transducer  33.05 
 
 
640 aa  169  1e-40  Shewanella loihica PV-4  Bacteria  normal  normal  0.270432 
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  35.28 
 
 
545 aa  169  1e-40  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  33.72 
 
 
646 aa  168  2e-40  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_009783  VIBHAR_00866  hypothetical protein  39.45 
 
 
418 aa  168  2.9999999999999998e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  31.75 
 
 
634 aa  167  2.9999999999999998e-40  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_3856  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
640 aa  167  5e-40  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.825575 
 
 
-
 
NC_007005  Psyr_2237  histidine kinase, HAMP region: chemotaxis sensory transducer  35.34 
 
 
661 aa  166  5.9999999999999996e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.551171  normal  0.645339 
 
 
-
 
NC_003910  CPS_4372  methyl-accepting chemotaxis protein  38.19 
 
 
619 aa  166  8e-40  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  31.74 
 
 
541 aa  166  9e-40  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  33.06 
 
 
536 aa  166  1.0000000000000001e-39  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  33.62 
 
 
639 aa  166  1.0000000000000001e-39  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  34.38 
 
 
712 aa  165  1.0000000000000001e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  33.52 
 
 
713 aa  165  1.0000000000000001e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009656  PSPA7_2234  putative chemotaxis transducer  35.89 
 
 
545 aa  165  2.0000000000000002e-39  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2472  methyl-accepting chemotaxis protein  34.94 
 
 
661 aa  164  2.0000000000000002e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.256702  n/a   
 
 
-
 
NC_009052  Sbal_1402  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
675 aa  165  2.0000000000000002e-39  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0962  methyl-accepting chemotaxis protein  34.19 
 
 
643 aa  165  2.0000000000000002e-39  Vibrio cholerae O395  Bacteria  hitchhiker  0.000917898  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  32.87 
 
 
712 aa  165  2.0000000000000002e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_011663  Sbal223_2952  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
675 aa  164  3e-39  Shewanella baltica OS223  Bacteria  normal  0.11864  normal 
 
 
-
 
NC_009997  Sbal195_1425  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
675 aa  164  3e-39  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  34.99 
 
 
634 aa  164  3e-39  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  28.81 
 
 
540 aa  164  4.0000000000000004e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  34.43 
 
 
653 aa  164  5.0000000000000005e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  33.97 
 
 
620 aa  163  5.0000000000000005e-39  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  34.17 
 
 
647 aa  164  5.0000000000000005e-39  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
572 aa  163  6e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  35.88 
 
 
637 aa  163  7e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  35.31 
 
 
714 aa  163  8.000000000000001e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_009438  Sputcn32_1313  methyl-accepting chemotaxis sensory transducer  35.2 
 
 
675 aa  162  1e-38  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
543 aa  162  1e-38  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  34.51 
 
 
552 aa  162  1e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
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