More than 300 homologs were found in PanDaTox collection
for query gene Sama_1954 on replicon NC_008700
Organism: Shewanella amazonensis SB2B



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_2599  methyl-accepting chemotaxis sensory transducer  68.57 
 
 
501 aa  672    Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000558383  normal 
 
 
-
 
NC_009052  Sbal_1872  methyl-accepting chemotaxis sensory transducer  69.09 
 
 
506 aa  695    Shewanella baltica OS155  Bacteria  normal  0.0204582  n/a   
 
 
-
 
NC_004347  SO_2083  methyl-accepting chemotaxis protein  67.91 
 
 
505 aa  681    Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2217  methyl-accepting chemotaxis sensory transducer  64.96 
 
 
500 aa  649    Shewanella loihica PV-4  Bacteria  normal  0.802205  normal  0.183546 
 
 
-
 
NC_009438  Sputcn32_1827  methyl-accepting chemotaxis sensory transducer  68.32 
 
 
502 aa  692    Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00626539  n/a   
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  70.61 
 
 
505 aa  712    Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_011663  Sbal223_2420  methyl-accepting chemotaxis sensory transducer  69.29 
 
 
506 aa  693    Shewanella baltica OS223  Bacteria  normal  0.0671416  hitchhiker  0.00255163 
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  69.64 
 
 
500 aa  665    Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_009997  Sbal195_1906  methyl-accepting chemotaxis sensory transducer  68.9 
 
 
506 aa  691    Shewanella baltica OS195  Bacteria  hitchhiker  0.00117287  normal 
 
 
-
 
NC_008321  Shewmr4_1807  methyl-accepting chemotaxis sensory transducer  69.63 
 
 
505 aa  704    Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  69.63 
 
 
505 aa  704    Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1954  putative methyl-accepting chemotaxis sensory transducer  100 
 
 
504 aa  1016    Shewanella amazonensis SB2B  Bacteria  normal  0.0290306  normal 
 
 
-
 
NC_009665  Shew185_1899  methyl-accepting chemotaxis sensory transducer  69.69 
 
 
506 aa  698    Shewanella baltica OS185  Bacteria  hitchhiker  0.000132488  n/a   
 
 
-
 
NC_009901  Spea_2471  methyl-accepting chemotaxis sensory transducer  65.82 
 
 
499 aa  631  1e-180  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  40.79 
 
 
467 aa  330  3e-89  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  40.9 
 
 
482 aa  318  1e-85  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  41.98 
 
 
482 aa  317  3e-85  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  41.27 
 
 
484 aa  317  3e-85  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  41.07 
 
 
484 aa  315  9.999999999999999e-85  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  41.2 
 
 
484 aa  314  1.9999999999999998e-84  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  41.4 
 
 
484 aa  313  2.9999999999999996e-84  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  41.4 
 
 
484 aa  314  2.9999999999999996e-84  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  40.28 
 
 
484 aa  313  2.9999999999999996e-84  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  40.66 
 
 
484 aa  312  1e-83  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4500  methyl-accepting chemotaxis protein  40.24 
 
 
467 aa  310  4e-83  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000000193555 
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  42.04 
 
 
482 aa  309  5.9999999999999995e-83  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_02368  hypothetical protein  47.69 
 
 
472 aa  304  2.0000000000000002e-81  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  40.08 
 
 
484 aa  302  8.000000000000001e-81  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  40.32 
 
 
479 aa  302  8.000000000000001e-81  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3852  methyl-accepting chemotaxis sensory transducer  38.45 
 
 
467 aa  300  4e-80  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  38.38 
 
 
480 aa  297  3e-79  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007954  Sden_3066  chemotaxis sensory transducer  38.51 
 
 
488 aa  291  3e-77  Shewanella denitrificans OS217  Bacteria  normal  0.301784  n/a   
 
 
-
 
NC_009901  Spea_1637  methyl-accepting chemotaxis sensory transducer  40.83 
 
 
482 aa  284  3.0000000000000004e-75  Shewanella pealeana ATCC 700345  Bacteria  normal  0.301948  n/a   
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  39.48 
 
 
481 aa  284  3.0000000000000004e-75  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  36.93 
 
 
476 aa  284  3.0000000000000004e-75  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009092  Shew_2902  methyl-accepting chemotaxis sensory transducer  37.07 
 
 
479 aa  281  2e-74  Shewanella loihica PV-4  Bacteria  normal  0.56843  normal  0.473301 
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  38.1 
 
 
478 aa  281  2e-74  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  35.98 
 
 
473 aa  278  2e-73  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  38.84 
 
 
481 aa  271  2e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  36.88 
 
 
479 aa  270  4e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  39.06 
 
 
638 aa  203  5e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  37.08 
 
 
640 aa  199  1.0000000000000001e-49  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  38.05 
 
 
629 aa  197  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  40.77 
 
 
533 aa  195  1e-48  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  39.49 
 
 
536 aa  195  1e-48  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  40.77 
 
 
533 aa  195  1e-48  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  38.35 
 
 
640 aa  194  2e-48  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  39.13 
 
 
634 aa  194  4e-48  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  37.05 
 
 
634 aa  191  2e-47  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  35.63 
 
 
642 aa  191  2.9999999999999997e-47  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  36.34 
 
 
713 aa  191  2.9999999999999997e-47  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  38.72 
 
 
533 aa  191  2.9999999999999997e-47  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  36.97 
 
 
630 aa  189  1e-46  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  36.97 
 
 
630 aa  189  1e-46  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  36.97 
 
 
630 aa  189  1e-46  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
638 aa  188  2e-46  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  38.15 
 
 
638 aa  187  3e-46  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  36.44 
 
 
559 aa  187  4e-46  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  37.11 
 
 
637 aa  187  4e-46  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  38.46 
 
 
638 aa  187  5e-46  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  37.47 
 
 
552 aa  187  6e-46  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
630 aa  186  9e-46  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
630 aa  186  9e-46  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  34.11 
 
 
630 aa  185  1.0000000000000001e-45  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  35.65 
 
 
640 aa  186  1.0000000000000001e-45  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
630 aa  186  1.0000000000000001e-45  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.06 
 
 
630 aa  186  1.0000000000000001e-45  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  37.69 
 
 
773 aa  184  2.0000000000000003e-45  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  37.18 
 
 
712 aa  185  2.0000000000000003e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
634 aa  184  3e-45  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  36.89 
 
 
712 aa  184  3e-45  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_009665  Shew185_3455  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
543 aa  184  3e-45  Shewanella baltica OS185  Bacteria  normal  0.0121993  n/a   
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  36.53 
 
 
640 aa  184  3e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3382  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
543 aa  184  3e-45  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_0925  methyl-accepting chemotaxis sensory transducer  34.56 
 
 
543 aa  184  4.0000000000000006e-45  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.78 
 
 
568 aa  184  4.0000000000000006e-45  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_0908  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
543 aa  184  4.0000000000000006e-45  Shewanella baltica OS155  Bacteria  normal  0.073872  n/a   
 
 
-
 
NC_009997  Sbal195_3579  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
543 aa  184  5.0000000000000004e-45  Shewanella baltica OS195  Bacteria  normal  normal  0.0986947 
 
 
-
 
NC_009654  Mmwyl1_0410  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
538 aa  184  5.0000000000000004e-45  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  36.34 
 
 
681 aa  183  7e-45  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  38.21 
 
 
533 aa  182  1e-44  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_009997  Sbal195_4233  methyl-accepting chemotaxis sensory transducer  35.33 
 
 
525 aa  182  1e-44  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000524679 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  35.24 
 
 
642 aa  181  2e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_011663  Sbal223_0226  methyl-accepting chemotaxis sensory transducer  35.04 
 
 
527 aa  181  2e-44  Shewanella baltica OS223  Bacteria  normal  normal  0.16836 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  36.26 
 
 
548 aa  181  2e-44  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  34.33 
 
 
639 aa  181  2.9999999999999997e-44  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_009784  VIBHAR_06314  histidine kinase  40.65 
 
 
623 aa  181  2.9999999999999997e-44  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  35.88 
 
 
653 aa  181  4e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  40.32 
 
 
637 aa  181  4e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_008321  Shewmr4_0924  methyl-accepting chemotaxis sensory transducer  37.78 
 
 
543 aa  180  4.999999999999999e-44  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_0959  methyl-accepting chemotaxis sensory transducer  37.62 
 
 
543 aa  180  4.999999999999999e-44  Shewanella sp. MR-7  Bacteria  normal  0.656726  normal  0.666936 
 
 
-
 
NC_007005  Psyr_1491  histidine kinase, HAMP region: chemotaxis sensory transducer  38.1 
 
 
539 aa  180  7e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  38.62 
 
 
679 aa  179  9e-44  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  35.12 
 
 
639 aa  179  1e-43  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  37.83 
 
 
540 aa  179  1e-43  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_009656  PSPA7_4874  chemotactic transducer PctC  31.3 
 
 
632 aa  179  1e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.153332  n/a   
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  36.14 
 
 
564 aa  179  1e-43  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  36.29 
 
 
546 aa  179  1e-43  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_011313  VSAL_II0756  methyl-accepting chemotaxis protein  33.99 
 
 
558 aa  179  1e-43  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3309  methyl-accepting chemotaxis sensory transducer  35.99 
 
 
625 aa  179  1e-43  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.776822 
 
 
-
 
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