More than 300 homologs were found in PanDaTox collection
for query gene Sfri_3719 on replicon NC_008345
Organism: Shewanella frigidimarina NCIMB 400



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007954  Sden_3066  chemotaxis sensory transducer  67.85 
 
 
488 aa  649    Shewanella denitrificans OS217  Bacteria  normal  0.301784  n/a   
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  100 
 
 
479 aa  962    Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_009092  Shew_2902  methyl-accepting chemotaxis sensory transducer  65.55 
 
 
479 aa  611  1e-173  Shewanella loihica PV-4  Bacteria  normal  0.56843  normal  0.473301 
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  60.75 
 
 
478 aa  561  1.0000000000000001e-159  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  60.83 
 
 
480 aa  550  1e-155  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  60.21 
 
 
476 aa  530  1e-149  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  56.78 
 
 
473 aa  528  1e-148  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  43.09 
 
 
484 aa  353  5e-96  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  42.89 
 
 
484 aa  351  1e-95  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  42.89 
 
 
484 aa  350  3e-95  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  42.68 
 
 
484 aa  349  5e-95  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
481 aa  337  1.9999999999999998e-91  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  41.03 
 
 
484 aa  336  5.999999999999999e-91  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  40.9 
 
 
484 aa  335  1e-90  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  40.9 
 
 
484 aa  335  1e-90  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
484 aa  329  6e-89  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  41.44 
 
 
482 aa  329  8e-89  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_1637  methyl-accepting chemotaxis sensory transducer  41.49 
 
 
482 aa  325  9e-88  Shewanella pealeana ATCC 700345  Bacteria  normal  0.301948  n/a   
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  40.25 
 
 
482 aa  325  1e-87  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  40 
 
 
479 aa  324  2e-87  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  40.24 
 
 
482 aa  323  4e-87  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  38.57 
 
 
481 aa  310  4e-83  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_1954  putative methyl-accepting chemotaxis sensory transducer  36.96 
 
 
504 aa  276  4e-73  Shewanella amazonensis SB2B  Bacteria  normal  0.0290306  normal 
 
 
-
 
NC_004347  SO_2083  methyl-accepting chemotaxis protein  38.02 
 
 
505 aa  265  1e-69  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  36.49 
 
 
505 aa  260  4e-68  Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_009052  Sbal_1872  methyl-accepting chemotaxis sensory transducer  36.43 
 
 
506 aa  258  1e-67  Shewanella baltica OS155  Bacteria  normal  0.0204582  n/a   
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  37.55 
 
 
500 aa  258  1e-67  Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_009092  Shew_2217  methyl-accepting chemotaxis sensory transducer  37.13 
 
 
500 aa  258  2e-67  Shewanella loihica PV-4  Bacteria  normal  0.802205  normal  0.183546 
 
 
-
 
NC_011663  Sbal223_2420  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
506 aa  256  5e-67  Shewanella baltica OS223  Bacteria  normal  0.0671416  hitchhiker  0.00255163 
 
 
-
 
NC_009438  Sputcn32_1827  methyl-accepting chemotaxis sensory transducer  36.88 
 
 
502 aa  256  5e-67  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00626539  n/a   
 
 
-
 
NC_009997  Sbal195_1906  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
506 aa  256  5e-67  Shewanella baltica OS195  Bacteria  hitchhiker  0.00117287  normal 
 
 
-
 
NC_009665  Shew185_1899  methyl-accepting chemotaxis sensory transducer  36.24 
 
 
506 aa  256  6e-67  Shewanella baltica OS185  Bacteria  hitchhiker  0.000132488  n/a   
 
 
-
 
NC_008321  Shewmr4_1807  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
505 aa  254  2.0000000000000002e-66  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  36.22 
 
 
505 aa  254  2.0000000000000002e-66  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3852  methyl-accepting chemotaxis sensory transducer  38.2 
 
 
467 aa  253  4.0000000000000004e-66  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2599  methyl-accepting chemotaxis sensory transducer  37.26 
 
 
501 aa  251  3e-65  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000558383  normal 
 
 
-
 
NC_009901  Spea_2471  methyl-accepting chemotaxis sensory transducer  35.86 
 
 
499 aa  240  2.9999999999999997e-62  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  34.78 
 
 
467 aa  238  1e-61  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_009831  Ssed_4500  methyl-accepting chemotaxis protein  34.04 
 
 
467 aa  237  3e-61  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000000193555 
 
 
-
 
NC_009783  VIBHAR_02368  hypothetical protein  35.38 
 
 
472 aa  234  2.0000000000000002e-60  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.84 
 
 
568 aa  188  2e-46  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  36.03 
 
 
713 aa  184  2.0000000000000003e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  35.13 
 
 
629 aa  181  2e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  33.89 
 
 
639 aa  182  2e-44  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  35.43 
 
 
541 aa  181  2.9999999999999997e-44  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  33.58 
 
 
640 aa  180  4.999999999999999e-44  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  33.24 
 
 
633 aa  179  8e-44  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  32.35 
 
 
712 aa  177  3e-43  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  34.71 
 
 
626 aa  176  6e-43  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  33.59 
 
 
712 aa  176  7e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  34.18 
 
 
638 aa  172  9e-42  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.96 
 
 
533 aa  172  1e-41  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  38.22 
 
 
636 aa  172  1e-41  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  34.93 
 
 
533 aa  172  1e-41  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_008463  PA14_26280  putative chemotaxis transducer  34.05 
 
 
545 aa  172  1e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.917899 
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  35.48 
 
 
716 aa  171  2e-41  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  34.05 
 
 
653 aa  172  2e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  35.56 
 
 
538 aa  172  2e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  32.49 
 
 
619 aa  171  3e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007492  Pfl01_3770  chemotaxis sensory transducer  35.39 
 
 
715 aa  171  3e-41  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  34.37 
 
 
541 aa  171  3e-41  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  33.86 
 
 
638 aa  171  3e-41  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_009656  PSPA7_2234  putative chemotaxis transducer  35.58 
 
 
545 aa  170  4e-41  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  34.31 
 
 
653 aa  170  4e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  32.78 
 
 
575 aa  171  4e-41  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_004578  PSPTO_2472  methyl-accepting chemotaxis protein  34.64 
 
 
661 aa  170  5e-41  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.256702  n/a   
 
 
-
 
NC_013456  VEA_001822  methyl-accepting chemotaxis protein  36.83 
 
 
557 aa  170  5e-41  Vibrio sp. Ex25  Bacteria  unclonable  0.00000124429  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  36.42 
 
 
634 aa  170  6e-41  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  33.86 
 
 
638 aa  170  6e-41  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  35.38 
 
 
572 aa  169  7e-41  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  35.05 
 
 
626 aa  170  7e-41  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2237  histidine kinase, HAMP region: chemotaxis sensory transducer  34.48 
 
 
661 aa  169  9e-41  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.551171  normal  0.645339 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  36.01 
 
 
639 aa  169  1e-40  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0808  methyl-accepting chemotaxis sensory transducer  34.25 
 
 
554 aa  168  2e-40  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  33.05 
 
 
541 aa  168  2e-40  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  33.9 
 
 
541 aa  167  2.9999999999999998e-40  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  32.7 
 
 
546 aa  167  4e-40  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  32.5 
 
 
541 aa  167  4e-40  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_008577  Shewana3_2521  methyl-accepting chemotaxis sensory transducer  34.92 
 
 
533 aa  167  5e-40  Shewanella sp. ANA-3  Bacteria  normal  hitchhiker  0.000172201 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  34.74 
 
 
637 aa  167  5e-40  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009438  Sputcn32_2347  methyl-accepting chemotaxis sensory transducer  38.49 
 
 
533 aa  166  8e-40  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_0226  methyl-accepting chemotaxis sensory transducer  34.88 
 
 
527 aa  166  8e-40  Shewanella baltica OS223  Bacteria  normal  normal  0.16836 
 
 
-
 
NC_009997  Sbal195_4233  methyl-accepting chemotaxis sensory transducer  34.59 
 
 
525 aa  166  1.0000000000000001e-39  Shewanella baltica OS195  Bacteria  normal  hitchhiker  0.000524679 
 
 
-
 
NC_011312  VSAL_I2678  methyl-accepting chemotaxis protein  34.8 
 
 
533 aa  166  1.0000000000000001e-39  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.221197  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  32.87 
 
 
640 aa  165  1.0000000000000001e-39  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008345  Sfri_0581  methyl-accepting chemotaxis sensory transducer  33.42 
 
 
554 aa  166  1.0000000000000001e-39  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004525  methyl-accepting chemotaxis protein  35.89 
 
 
418 aa  165  2.0000000000000002e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  33.86 
 
 
638 aa  165  2.0000000000000002e-39  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  32.48 
 
 
634 aa  164  2.0000000000000002e-39  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  33.61 
 
 
559 aa  164  3e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  32.25 
 
 
637 aa  164  3e-39  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_008740  Maqu_2346  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
564 aa  164  3e-39  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  32.76 
 
 
543 aa  164  4.0000000000000004e-39  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2074  methyl-accepting chemotaxis sensory transducer  34.18 
 
 
714 aa  163  5.0000000000000005e-39  Pseudomonas putida W619  Bacteria  normal  0.203311  normal 
 
 
-
 
NC_009439  Pmen_1998  methyl-accepting chemotaxis sensory transducer  34.39 
 
 
714 aa  163  6e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.0164438 
 
 
-
 
NC_009783  VIBHAR_00866  hypothetical protein  36.24 
 
 
418 aa  163  6e-39  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  34.05 
 
 
640 aa  163  6e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  34.56 
 
 
631 aa  163  6e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A2596  methyl-accepting chemotaxis protein  35.03 
 
 
564 aa  163  8.000000000000001e-39  Vibrio cholerae O395  Bacteria  unclonable  0.00000000000057467  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  33.86 
 
 
540 aa  162  8.000000000000001e-39  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
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