More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_2472 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_2472  methyl-accepting chemotaxis protein  100 
 
 
661 aa  1327    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.256702  n/a   
 
 
-
 
NC_007005  Psyr_2237  histidine kinase, HAMP region: chemotaxis sensory transducer  92.89 
 
 
661 aa  1191    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.551171  normal  0.645339 
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  30.88 
 
 
658 aa  252  1e-65  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0207  methyl-accepting chemotaxis protein  30.17 
 
 
666 aa  246  6.999999999999999e-64  Vibrio cholerae O395  Bacteria  normal  0.152775  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  29.34 
 
 
663 aa  240  5e-62  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01518  hypothetical protein  29.51 
 
 
674 aa  240  5.999999999999999e-62  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  30.48 
 
 
672 aa  234  4.0000000000000004e-60  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  28.39 
 
 
674 aa  228  4e-58  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_009831  Ssed_3827  methyl-accepting chemotaxis transducer  40.74 
 
 
695 aa  226  1e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000221184 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  39.24 
 
 
541 aa  225  2e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  40.48 
 
 
716 aa  224  4e-57  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  39.15 
 
 
541 aa  222  9.999999999999999e-57  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  41.41 
 
 
638 aa  222  9.999999999999999e-57  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  40.4 
 
 
541 aa  221  3e-56  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  36.99 
 
 
638 aa  221  3.9999999999999997e-56  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_009457  VC0395_A1488  methyl-accepting chemotaxis protein  29.17 
 
 
672 aa  220  6e-56  Vibrio cholerae O395  Bacteria  normal  0.619219  n/a   
 
 
-
 
NC_007954  Sden_2891  chemotaxis sensory transducer  28.51 
 
 
673 aa  219  8.999999999999998e-56  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  38.66 
 
 
713 aa  219  1e-55  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  38.9 
 
 
712 aa  219  2e-55  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  29.68 
 
 
674 aa  218  2e-55  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  38.9 
 
 
712 aa  218  2.9999999999999998e-55  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  39.02 
 
 
637 aa  218  2.9999999999999998e-55  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  37.17 
 
 
541 aa  217  7e-55  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  38.14 
 
 
634 aa  215  1.9999999999999998e-54  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  35.63 
 
 
541 aa  215  2.9999999999999995e-54  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0732  methyl-accepting chemotaxis sensory transducer  37.56 
 
 
555 aa  215  2.9999999999999995e-54  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.177926 
 
 
-
 
NC_008345  Sfri_3082  methyl-accepting chemotaxis sensory transducer  30.03 
 
 
673 aa  214  2.9999999999999995e-54  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  39.39 
 
 
619 aa  213  5.999999999999999e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  40.73 
 
 
640 aa  213  7.999999999999999e-54  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  38.2 
 
 
570 aa  213  7.999999999999999e-54  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  39.2 
 
 
634 aa  212  1e-53  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
634 aa  212  1e-53  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2154  methyl-accepting chemotaxis sensory transducer  40.23 
 
 
627 aa  212  2e-53  Pseudomonas mendocina ymp  Bacteria  normal  0.0789614  normal  0.507372 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  39.15 
 
 
633 aa  212  2e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  40.16 
 
 
642 aa  211  3e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  39.32 
 
 
543 aa  211  3e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3580  methyl-accepting chemotaxis protein  38.03 
 
 
546 aa  211  4e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  39.1 
 
 
642 aa  211  4e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  41.39 
 
 
636 aa  211  5e-53  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  36.16 
 
 
638 aa  211  5e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  38.46 
 
 
541 aa  210  6e-53  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
568 aa  209  1e-52  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  39.38 
 
 
674 aa  209  1e-52  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_010506  Swoo_4795  methyl-accepting chemotaxis sensory transducer  40.56 
 
 
638 aa  209  1e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  0.884167  hitchhiker  0.000462611 
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  39.83 
 
 
634 aa  209  1e-52  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_1011  methyl-accepting chemotaxis sensory transducer  29.99 
 
 
675 aa  208  2e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  0.547128  hitchhiker  0.00024543 
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  36.65 
 
 
546 aa  207  4e-52  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_008345  Sfri_0080  methyl-accepting chemotaxis sensory transducer  42.13 
 
 
636 aa  207  7e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0859  methyl-accepting chemotaxis sensory transducer  28.65 
 
 
673 aa  206  9e-52  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  38.68 
 
 
673 aa  206  1e-51  Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  28.8 
 
 
674 aa  206  1e-51  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  37.23 
 
 
542 aa  206  1e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_007492  Pfl01_4266  chemotaxis sensory transducer  37.36 
 
 
546 aa  206  1e-51  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.261421  normal 
 
 
-
 
NC_008321  Shewmr4_0902  methyl-accepting chemotaxis sensory transducer  38.68 
 
 
673 aa  206  1e-51  Shewanella sp. MR-4  Bacteria  normal  normal  0.73728 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  41.37 
 
 
637 aa  206  1e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_008322  Shewmr7_3118  methyl-accepting chemotaxis sensory transducer  38.68 
 
 
673 aa  206  1e-51  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  35.87 
 
 
647 aa  205  2e-51  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  39.15 
 
 
638 aa  205  3e-51  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_004578  PSPTO_3279  methyl-accepting chemotaxis protein  38.75 
 
 
541 aa  204  4e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.149652  n/a   
 
 
-
 
NC_008700  Sama_3522  putative methyl-accepting chemotaxis sensory transducer  39.2 
 
 
636 aa  204  5e-51  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  35.68 
 
 
739 aa  204  5e-51  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  38.16 
 
 
629 aa  204  6e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  38.44 
 
 
640 aa  204  6e-51  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_010322  PputGB1_5071  methyl-accepting chemotaxis sensory transducer  37.34 
 
 
647 aa  202  9.999999999999999e-51  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_0099  chemotaxis sensory transducer  39.44 
 
 
639 aa  202  9.999999999999999e-51  Shewanella denitrificans OS217  Bacteria  unclonable  0.0000000152719  n/a   
 
 
-
 
NC_004347  SO_4454  methyl-accepting chemotaxis protein  41.36 
 
 
642 aa  202  1.9999999999999998e-50  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  42.66 
 
 
646 aa  202  1.9999999999999998e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  39.94 
 
 
681 aa  202  1.9999999999999998e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  37.85 
 
 
541 aa  202  1.9999999999999998e-50  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  38.57 
 
 
652 aa  202  1.9999999999999998e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_008739  Maqu_3979  methyl-accepting chemotaxis sensory transducer  42.63 
 
 
552 aa  201  3e-50  Marinobacter aquaeolei VT8  Bacteria  normal  0.594367  n/a   
 
 
-
 
NC_008740  Maqu_0633  methyl-accepting chemotaxis sensory transducer  42.63 
 
 
552 aa  201  3e-50  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  37.71 
 
 
425 aa  201  3.9999999999999996e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  35.48 
 
 
653 aa  201  3.9999999999999996e-50  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009438  Sputcn32_0387  methyl-accepting chemotaxis sensory transducer  40.36 
 
 
638 aa  201  3.9999999999999996e-50  Shewanella putrefaciens CN-32  Bacteria  normal  0.408395  n/a   
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  38 
 
 
541 aa  201  3.9999999999999996e-50  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_0931  methyl-accepting chemotaxis sensory transducer  37.22 
 
 
541 aa  200  6e-50  Shewanella baltica OS195  Bacteria  normal  normal  0.476721 
 
 
-
 
NC_007492  Pfl01_1630  chemotaxis sensory transducer  38.6 
 
 
541 aa  200  7e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0250136 
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  40.82 
 
 
679 aa  199  9e-50  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  35.57 
 
 
541 aa  200  9e-50  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_3169  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
620 aa  199  9e-50  Shewanella pealeana ATCC 700345  Bacteria  normal  0.225635  n/a   
 
 
-
 
NC_008577  Shewana3_0764  methyl-accepting chemotaxis sensory transducer  38.01 
 
 
620 aa  199  1.0000000000000001e-49  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009997  Sbal195_1076  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
673 aa  199  2.0000000000000003e-49  Shewanella baltica OS195  Bacteria  normal  0.450868  normal 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  37.7 
 
 
653 aa  198  2.0000000000000003e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  38.94 
 
 
559 aa  199  2.0000000000000003e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_1043  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
673 aa  199  2.0000000000000003e-49  Shewanella baltica OS185  Bacteria  normal  0.530938  n/a   
 
 
-
 
NC_009052  Sbal_0974  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3316  methyl-accepting chemotaxis sensory transducer  38.55 
 
 
673 aa  198  2.0000000000000003e-49  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  38.29 
 
 
541 aa  198  2.0000000000000003e-49  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  35.73 
 
 
548 aa  198  2.0000000000000003e-49  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_002947  PP_5021  methyl-accepting chemotaxis sensory transducer  36.8 
 
 
647 aa  198  3e-49  Pseudomonas putida KT2440  Bacteria  normal  0.0828859  normal 
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
541 aa  198  3e-49  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
541 aa  198  3e-49  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_4190  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
688 aa  198  3e-49  Pseudomonas putida GB-1  Bacteria  normal  0.251316  normal 
 
 
-
 
NC_008577  Shewana3_0272  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
638 aa  197  4.0000000000000005e-49  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.00090491  hitchhiker  0.000000349734 
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  39.08 
 
 
676 aa  197  4.0000000000000005e-49  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  34.46 
 
 
541 aa  197  4.0000000000000005e-49  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3984  methyl-accepting chemotaxis sensory transducer  38.42 
 
 
688 aa  197  4.0000000000000005e-49  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  36.36 
 
 
541 aa  197  4.0000000000000005e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_008322  Shewmr7_3750  methyl-accepting chemotaxis sensory transducer  39.72 
 
 
638 aa  197  4.0000000000000005e-49  Shewanella sp. MR-7  Bacteria  normal  0.666265  normal  0.186245 
 
 
-
 
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