Gene VC0395_A1488 details

Gene Information

• Locus tag: VC0395_A1488
• ID: 5137197
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 1597596
• End bp: 1599614
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640532946
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_001217431
• Protein GI: 147674132
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.619219
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGATT TTCGAGGGAG AGAAATTATG CAGGGTTCCG TTATTCGGCG TATGTATGCC 
GGTTTTGCGC TGATCATCAT AATGTTTGTG GTGACTGTCG CCATCATGCT TCGTGGCATG 
AATCAAATTC ACAGCAATTT TGAAAGTGTT TCAACCGCTG CATTGCCTCT CGTCTCTCTC 
TCTAATCAGA CGAGTGTTCA ACTCTTGTCT GCCGATAAAT CGTTTAAAGA CTTTCTGACT 
ACGCAAGATA CTTCGCTCAT GGACGGTATG CGTCAAGAGT TTGCTCAGTC TAAACAGCGC 
TTTCAATCTG TTTTGGCGGA ACTGAGTCAA GCCAGTGTGA ATCATCCCGA ACTGGCACAG 
CCAATCACGG AATTAAAGCA GCTCGAAACC CGCTATTTTA GTGAAGCTGA CCTCGCCATG 
GATAACTATC AAGCCATGTT TGCTGCTCAA GCTTCCGTGC AAAAGTCGAC TCGTGAGTTC 
CAACGTCTTC ATTCAGAACT GAGTGTCGGG ATGAAAGAGT TTGTCGATGA CAACGACAGC 
ATTTCGGTCA AAGTGATGGC CAAAAGCTAC TTCATCAAAT TAAAAGATGC CGAAGTGATC 
ACTTCTGATG CCTTAGCCAG TTCAGATGTC GCCTTTGTGG AAAAAGCGGT CAATCAAAAC 
AAAAAAGCGG TTACCCACCT AAACTACGCG TACCGAGGCC TCACCACGCA GATGCCGCAG 
TTGAAAGAGC GCTTTGATGA GCCAGTCGCG AAATTCACCC AAGACATCGG CCAAAAAGGC 
GGCGTACTGG ATCAACACAA TGAATATCTG CAAGCTCGCG CTGCGCTCTA TAACAATATT 
GCCAACCTCG CCAATGAAGT GGACAAAGCA ATGACCATTT TAGGCGCGTT TAACCAAACG 
GCGACCGACG ACCTGAACCA ATCCCTTGCT GAAGCCGGCT CAGTTTACCA ACAAGGTGCG 
ATTAAAGCGG TAGTGATTGG TATTGCCGTC GTTCTATTGG CAACTGCGAT TGGTTACCAC 
ATTGCGCACA GTGTGCGTGA ACCCGTAACT CGGATCCTCA AAACCTTAGA AAGCCTCACC 
CAAGGCAATA TGACGCAACG AATTGAGATT CGCTACAACA ACGAATTCAG CCGCCTGAGC 
CGTCACATCA ATAGTCTTGC CGATAACCTA CACGACATTT TAGTCAAGCT CAACAGTGCC 
TCCGATGATT TGACCGCGAC AGCATCGACA AACCAAACGA CCTCACTGAG TGCACAAAAC 
AAGCTCAACA GTCAACGTGA ACAGACCTCT AGCGTCGCAG CCGCAATGAC GGAAATGGCT 
CACTCGGTGC AAGAAGTCGC CAATAGTGCG CAAAATTCAC TGGCGATGGT GCAACAAGTC 
GAAACCGCAT CGGAGTCAGG CCGCCAGATC ATGAGCACCA ACATCAGCAC AATCCGTCAA 
CTTGAAACAC GCTTAATCGA GTCAGTCGAG GCGGTCGGCG ACTTACGCAA GATGAGCAGC 
CAAATCGGCT CTATCTTAGA TGTCATCCGC AATATTGCTG AGCAGACCAA CCTTTTGGCG 
CTCAATGCTG CGATTGAAGC GGCGCGTGCA GGAGAACAAG GCCGCGGCTT TGCGGTGGTG 
GCGGATGAAG TTCGCGTTCT TGCGCAGCGC ACAACGCAAT CGACGTCAGA AATCGAATCG 
ATGATCAGCA ATCTGCAATC CAGCTCTTCA TTAGCCAGTA AGGTTATTGA GAGCTGTATG 
CAAGATATGG AACTCTCCGT CGAACAAGCT TCCCATGCCA ACAGTGCCAT GGAAGAAATT 
CAAGCATTGA TCATCGAAAT CAGCCATATG AGTACGCATA TCTCTCAAGC GGCCGGTGAG 
CAAAACGAAA CCACCACCTC GATCGCTCGC AGCATCGAAG ATATCAACCA TATCTCGGAT 
GAAAGCTACC AAGCGATGTC ACAAATTGCG CAAACCAGTG CGAATTTGAC CGCACTCGCC 
AACCAACAGA GTGAGTTAGT CCATAGGTTT AAACTCTAA 

 

Protein sequence

MSDFRGREIM QGSVIRRMYA GFALIIIMFV VTVAIMLRGM NQIHSNFESV STAALPLVSL 
SNQTSVQLLS ADKSFKDFLT TQDTSLMDGM RQEFAQSKQR FQSVLAELSQ ASVNHPELAQ 
PITELKQLET RYFSEADLAM DNYQAMFAAQ ASVQKSTREF QRLHSELSVG MKEFVDDNDS 
ISVKVMAKSY FIKLKDAEVI TSDALASSDV AFVEKAVNQN KKAVTHLNYA YRGLTTQMPQ 
LKERFDEPVA KFTQDIGQKG GVLDQHNEYL QARAALYNNI ANLANEVDKA MTILGAFNQT 
ATDDLNQSLA EAGSVYQQGA IKAVVIGIAV VLLATAIGYH IAHSVREPVT RILKTLESLT 
QGNMTQRIEI RYNNEFSRLS RHINSLADNL HDILVKLNSA SDDLTATAST NQTTSLSAQN 
KLNSQREQTS SVAAAMTEMA HSVQEVANSA QNSLAMVQQV ETASESGRQI MSTNISTIRQ 
LETRLIESVE AVGDLRKMSS QIGSILDVIR NIAEQTNLLA LNAAIEAARA GEQGRGFAVV 
ADEVRVLAQR TTQSTSEIES MISNLQSSSS LASKVIESCM QDMELSVEQA SHANSAMEEI 
QALIIEISHM STHISQAAGE QNETTTSIAR SIEDINHISD ESYQAMSQIA QTSANLTALA 
NQQSELVHRF KL