More than 300 homologs were found in PanDaTox collection
for query gene VEA_004004 on replicon NC_013456
Organism: Vibrio sp. Ex25



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011312  VSAL_I1294  methyl-accepting chemotaxis protein  57.92 
 
 
663 aa  709    Aliivibrio salmonicida LFI1238  Bacteria  normal  0.148925  n/a   
 
 
-
 
NC_009457  VC0395_A1488  methyl-accepting chemotaxis protein  74.51 
 
 
672 aa  1003    Vibrio cholerae O395  Bacteria  normal  0.619219  n/a   
 
 
-
 
NC_013456  VEA_004004  methyl-accepting chemotaxis protein  100 
 
 
663 aa  1340    Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01518  hypothetical protein  91.86 
 
 
674 aa  1242    Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  40.17 
 
 
638 aa  237  5.0000000000000005e-61  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_008228  Patl_3424  methyl-accepting chemotaxis sensory transducer  28.82 
 
 
674 aa  229  1e-58  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.560716  n/a   
 
 
-
 
NC_011138  MADE_03417  methyl-accepting chemotaxis protein  28.96 
 
 
674 aa  228  2e-58  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.617562  n/a   
 
 
-
 
NC_004578  PSPTO_2472  methyl-accepting chemotaxis protein  29.34 
 
 
661 aa  226  1e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.256702  n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  38.24 
 
 
634 aa  226  1e-57  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0207  methyl-accepting chemotaxis protein  40.48 
 
 
666 aa  224  4.9999999999999996e-57  Vibrio cholerae O395  Bacteria  normal  0.152775  n/a   
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  35.95 
 
 
658 aa  223  7e-57  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2237  histidine kinase, HAMP region: chemotaxis sensory transducer  29.19 
 
 
661 aa  222  1.9999999999999999e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.551171  normal  0.645339 
 
 
-
 
NC_007954  Sden_2891  chemotaxis sensory transducer  28.98 
 
 
673 aa  218  2.9999999999999998e-55  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0443  methyl-accepting chemotaxis sensory transducer  37.39 
 
 
541 aa  217  4e-55  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0619  methyl-accepting chemotaxis sensory transducer  37.68 
 
 
634 aa  218  4e-55  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  37.11 
 
 
634 aa  217  5.9999999999999996e-55  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  37.99 
 
 
653 aa  216  9.999999999999999e-55  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_004578  PSPTO_3379  methyl-accepting chemotaxis protein  38.76 
 
 
559 aa  215  2.9999999999999995e-54  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  35.06 
 
 
637 aa  214  2.9999999999999995e-54  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_011901  Tgr7_2492  methyl-accepting chemotaxis sensory transducer  41.4 
 
 
572 aa  212  2e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008700  Sama_2607  putative methyl-accepting chemotaxis sensory transducer  37.6 
 
 
541 aa  211  3e-53  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00122932  normal 
 
 
-
 
NC_009831  Ssed_3705  methyl-accepting chemotaxis sensory transducer  34.38 
 
 
541 aa  211  3e-53  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0963791  normal 
 
 
-
 
NC_008463  PA14_31400  putative chemotaxis transducer  34.09 
 
 
575 aa  211  4e-53  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.307711  hitchhiker  0.0000000000413464 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  37.8 
 
 
637 aa  210  8e-53  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
541 aa  209  9e-53  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_011138  MADE_01731  Methyl-accepting chemotaxis protein  36.73 
 
 
539 aa  209  1e-52  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2000  methyl-accepting chemotaxis sensory transducer  37.33 
 
 
560 aa  209  2e-52  Pseudomonas mendocina ymp  Bacteria  normal  0.0144557  normal  0.0324669 
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  36.83 
 
 
653 aa  209  2e-52  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_010506  Swoo_3725  methyl-accepting chemotaxis sensory transducer  36.15 
 
 
620 aa  209  2e-52  Shewanella woodyi ATCC 51908  Bacteria  normal  0.403145  normal 
 
 
-
 
NC_009997  Sbal195_1793  methyl-accepting chemotaxis sensory transducer  37.97 
 
 
533 aa  208  3e-52  Shewanella baltica OS195  Bacteria  normal  0.0175347  normal  0.776493 
 
 
-
 
NC_011663  Sbal223_2530  methyl-accepting chemotaxis sensory transducer with Cache sensor  37.97 
 
 
533 aa  207  4e-52  Shewanella baltica OS223  Bacteria  normal  0.616311  hitchhiker  0.00580613 
 
 
-
 
NC_003910  CPS_4528  methyl-accepting chemotaxis protein  28.84 
 
 
672 aa  207  6e-52  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1108  putative methyl-accepting chemotaxis sensory transducer  35.63 
 
 
539 aa  207  6e-52  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  36.81 
 
 
653 aa  206  8e-52  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  34.45 
 
 
549 aa  206  1e-51  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_013889  TK90_1029  methyl-accepting chemotaxis sensory transducer  37.28 
 
 
411 aa  206  1e-51  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  37.5 
 
 
545 aa  206  2e-51  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_43220  putative methyl-accepting chemotaxis transducer  36.18 
 
 
652 aa  205  2e-51  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.625872 
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  34.66 
 
 
544 aa  204  3e-51  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  37.22 
 
 
639 aa  204  4e-51  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0085  methyl-accepting chemotaxis sensory transducer  36.93 
 
 
638 aa  202  9.999999999999999e-51  Shewanella loihica PV-4  Bacteria  normal  0.0647334  normal 
 
 
-
 
NC_007954  Sden_1091  chemotaxis sensory transducer  36.22 
 
 
620 aa  202  9.999999999999999e-51  Shewanella denitrificans OS217  Bacteria  normal  0.0174472  n/a   
 
 
-
 
NC_009439  Pmen_3669  methyl-accepting chemotaxis sensory transducer  36.01 
 
 
716 aa  202  1.9999999999999998e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.170337  normal 
 
 
-
 
NC_002947  PP_2861  methyl-accepting chemotaxis sensory transducer  34.38 
 
 
544 aa  202  1.9999999999999998e-50  Pseudomonas putida KT2440  Bacteria  normal  normal  0.445183 
 
 
-
 
NC_009656  PSPA7_5279  putative chemotaxis transducer  35.14 
 
 
712 aa  202  1.9999999999999998e-50  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0493383  n/a   
 
 
-
 
NC_012918  GM21_2326  methyl-accepting chemotaxis sensory transducer  34.92 
 
 
547 aa  202  1.9999999999999998e-50  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008345  Sfri_3082  methyl-accepting chemotaxis sensory transducer  30.1 
 
 
673 aa  202  1.9999999999999998e-50  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
640 aa  201  3e-50  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_008463  PA14_61300  putative chemotaxis transducer  34.86 
 
 
712 aa  201  3e-50  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.862971 
 
 
-
 
NC_008700  Sama_2609  putative methyl-accepting chemotaxis sensory transducer  35.56 
 
 
621 aa  201  3.9999999999999996e-50  Shewanella amazonensis SB2B  Bacteria  normal  0.206567  normal 
 
 
-
 
NC_009654  Mmwyl1_2301  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
632 aa  201  3.9999999999999996e-50  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2526  methyl-accepting chemotaxis protein  35.31 
 
 
559 aa  201  5e-50  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.591236  n/a   
 
 
-
 
NC_011146  Gbem_1884  methyl-accepting chemotaxis sensory transducer  35.47 
 
 
547 aa  201  5e-50  Geobacter bemidjiensis Bem  Bacteria  normal  0.114501  n/a   
 
 
-
 
NC_009092  Shew_2954  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
620 aa  200  6e-50  Shewanella loihica PV-4  Bacteria  decreased coverage  0.000679912  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  36.18 
 
 
548 aa  200  9e-50  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_004347  SO_3582  methyl-accepting chemotaxis protein  33.71 
 
 
541 aa  199  1.0000000000000001e-49  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  34.86 
 
 
640 aa  199  1.0000000000000001e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009439  Pmen_2650  methyl-accepting chemotaxis sensory transducer  34.97 
 
 
568 aa  199  1.0000000000000001e-49  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009901  Spea_0859  methyl-accepting chemotaxis sensory transducer  38.4 
 
 
673 aa  199  1.0000000000000001e-49  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0808  methyl-accepting chemotaxis sensory transducer  35.69 
 
 
541 aa  199  1.0000000000000001e-49  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_0209  methyl-accepting chemotaxis sensory transducer  36.34 
 
 
677 aa  198  2.0000000000000003e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1011  methyl-accepting chemotaxis sensory transducer  36.96 
 
 
675 aa  199  2.0000000000000003e-49  Shewanella woodyi ATCC 51908  Bacteria  normal  0.547128  hitchhiker  0.00024543 
 
 
-
 
NC_009831  Ssed_3502  methyl-accepting chemotaxis sensory transducer  35.44 
 
 
620 aa  199  2.0000000000000003e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  0.666992  normal  0.2901 
 
 
-
 
NC_008700  Sama_2822  putative methyl-accepting chemotaxis sensory transducer  38.44 
 
 
673 aa  199  2.0000000000000003e-49  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.428629 
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  36.78 
 
 
638 aa  199  2.0000000000000003e-49  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2672  putative chemotaxis transducer  33.84 
 
 
538 aa  198  2.0000000000000003e-49  Pseudomonas aeruginosa PA7  Bacteria  normal  0.119833  n/a   
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
638 aa  199  2.0000000000000003e-49  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_1586  methyl-accepting chemotaxis sensory transducer  36.05 
 
 
626 aa  199  2.0000000000000003e-49  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0444  methyl-accepting chemotaxis sensory transducer  36.6 
 
 
647 aa  198  3e-49  Pseudomonas putida W619  Bacteria  normal  0.414929  normal 
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  38.37 
 
 
646 aa  198  3e-49  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_009092  Shew_0876  methyl-accepting chemotaxis sensory transducer  27.67 
 
 
674 aa  198  3e-49  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4715  chemotaxis sensory transducer  34 
 
 
713 aa  198  3e-49  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.233277  normal  0.171171 
 
 
-
 
NC_008577  Shewana3_3212  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
673 aa  198  3e-49  Shewanella sp. ANA-3  Bacteria  normal  0.990285  normal  0.659639 
 
 
-
 
NC_009512  Pput_4895  methyl-accepting chemotaxis sensory transducer  36.02 
 
 
739 aa  197  4.0000000000000005e-49  Pseudomonas putida F1  Bacteria  normal  0.247309  normal 
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  37.05 
 
 
636 aa  197  4.0000000000000005e-49  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  34.08 
 
 
540 aa  197  4.0000000000000005e-49  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2174  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
544 aa  197  5.000000000000001e-49  Pseudomonas mendocina ymp  Bacteria  normal  decreased coverage  0.00506259 
 
 
-
 
NC_009831  Ssed_4404  methyl-accepting chemotaxis sensory transducer  37.18 
 
 
638 aa  197  6e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.0156105 
 
 
-
 
NC_008321  Shewmr4_0902  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
673 aa  197  6e-49  Shewanella sp. MR-4  Bacteria  normal  normal  0.73728 
 
 
-
 
NC_009831  Ssed_3827  methyl-accepting chemotaxis transducer  33.42 
 
 
695 aa  197  7e-49  Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.0000221184 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  36.92 
 
 
638 aa  196  8.000000000000001e-49  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  36.01 
 
 
628 aa  196  8.000000000000001e-49  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  36.28 
 
 
647 aa  196  9e-49  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  36.29 
 
 
543 aa  196  1e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0950  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
667 aa  196  1e-48  Shewanella putrefaciens CN-32  Bacteria  normal  0.231949  n/a   
 
 
-
 
NC_013457  VEA_000971  methyl-accepting chemotaxis protein  34.55 
 
 
553 aa  196  1e-48  Vibrio sp. Ex25  Bacteria  normal  0.370017  n/a   
 
 
-
 
NC_007492  Pfl01_3768  chemotaxis sensory transducer  37.54 
 
 
560 aa  196  1e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_2955  chemotaxis sensory transducer  36.44 
 
 
497 aa  196  1e-48  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0847  methyl-accepting chemotaxis sensory transducer  38.08 
 
 
620 aa  196  1e-48  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.566037  n/a   
 
 
-
 
NC_010506  Swoo_0712  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.9 
 
 
627 aa  195  2e-48  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0412159  hitchhiker  0.0000400753 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  36.81 
 
 
633 aa  196  2e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  34.88 
 
 
642 aa  195  2e-48  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_008577  Shewana3_0948  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
667 aa  195  2e-48  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
638 aa  195  2e-48  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_009997  Sbal195_1076  methyl-accepting chemotaxis sensory transducer  36.83 
 
 
673 aa  195  2e-48  Shewanella baltica OS195  Bacteria  normal  0.450868  normal 
 
 
-
 
NC_009665  Shew185_1043  methyl-accepting chemotaxis sensory transducer  36.83 
 
 
673 aa  195  2e-48  Shewanella baltica OS185  Bacteria  normal  0.530938  n/a   
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  30.28 
 
 
541 aa  195  2e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4192  chemotaxis sensory transducer  37.04 
 
 
654 aa  195  2e-48  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0946  methyl-accepting chemotaxis sensory transducer  31.82 
 
 
667 aa  196  2e-48  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_3118  methyl-accepting chemotaxis sensory transducer  27.18 
 
 
673 aa  195  2e-48  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>