Gene PSPTO_2472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_2472 
Symbol 
ID1184124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp2729060 
End bp2731045 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content60% 
IMG OID637393845 
Productmethyl-accepting chemotaxis protein 
Protein accessionNP_792284 
Protein GI28869665 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.256702 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGTTC TTCAGCGAGT GATCGGTGGG TTTGCCGTGC TGGTGGTGTT GCTGCTCGCC 
ATGGCGGGTA TCAGCTATCA AAGCACCCAT TCGATAAGCG AGCGCATCAG CATCATTACG
GGGCAGTCGG CACCGCTAAG CAGGGCGGCG AGTGAGCTTT ACGTGCATGT GCTGCGCGCC
AACCAGGCTC TGCTCGGGAT TTTGGTCAGC ACTGACCCCA AACAGATCGA CGAGGGCAAA
CAGCCGTTCA ACGACAGCAT GGCGCGCTTC AATCAGCTGC TGGACAGCAT TCCGGCCTAT
ACCGGCGACC GTGCCGAGCT GCGCGACAAC CTTAATCAGC AACGCCAACT CAGTACCGCC
TACGTAGAGC AGGCGCAAAC CCTGATCGCC AGCCATCGCC AGCACGTTTT GCAGGTGCTG
CAGAGCCGCG TCTTGCAGGG TTACAGCAAC AGCGAGGGTG CGCAGCTCAC CGGTTATCTG
CGCGATTACA TTGCCCGTGA GCGCACTACA GGTTCGTCCG AGAACGTGGC AGCGGCGGAA
AAGCTGCTGT TGGAAGTCGG CAAATCCTAT GAGGGGCTGG CCGCGCACGC CGCCACGCCG
GATATTCAGA CATTGCAGCG CGTGCTCAAC CTGCAGGATG AGGTGATCAG CACGCGGGCG
CGGGAGCTGA CAGCGGTTGA TCCGCGGGGC GGCCGTATTG CCGGGGTAAT GGTCAATCGC
TTGCTCAAAG ACCTGACCGG CGCTGACGGT GTCTATCAGG CCTACCGGCA GGAAGCGGCG
CTCGCCGAGC AGGTCGGCAA GCAGCGGCAG GCGGCAGAAG CGCGTTTGCA GGCAACGCTA
GACAAGATCG GCGAATTCGG CAATCAGTCG CTGGCAGTTG CCAACGAGGC CAAGGCCGGA
GCCGATTCGA CTATCGCCAC CAGCCTCAGT CTGTTGCTGA TCGCCTGCCT GTTGGCGGTG
TTGGCGGCAG CCATTATCGG TACATGGGTG GCCTTCAGCC TGCGGCGTCC ACTGGCGGCT
TTCCGTGGGG TGCTCAAAAC CCTTTCGGGT GGCGATATGC GGGTGCGTTT CGACGTCAGC
CGTCGGGATG AATTCGGTGA GCTGGGCGGC TATCTCAACG AGTTCACCCA GTCCTTGCAG
CAGACCTTTC GTGAGCTGAT TGGCTCTGCC GACACGCTCG CACTGACGGC CAGCCAGAAT
GCGCAGGTCA GTGAACAGAC CACCCGTGTT GTCGACGAGC AGAAAGACCG TTTGAACTCG
GCGGCTTCGG CGATGAATGA AATGGAAAGC ACCGTCGAAG AAGTGGCCCG CCGTGCGCAG
GACACGCGCA GTGCGGTGGA CAGCACCAGC GAGCTGACCA ACAAGGTACA GAAGCGTGTG
GCAGAAACCA TCGTCAACAT TCGCCAACAG GCCGAGCAGG TCAACAAGGC GTCGGCGGTG
ACTGATGAAT TGCAGAAGTA CGGGCAGAAC ATCGACGGTA TTGTCGATGC CATTCGCACG
ATTGCCGAAC AGACCAACCT GCTGGCCCTC AACGCAGCTA TCGAGGCTGC GCGTGCCGGG
GAGCAGGGCA GAGGCTTTGC GGTGGTCGCC GACGAAGTGC GCTCACTGGC CAGTCGTACC
CAGACATCGA CCAGCGAGAT CCAGGAAATG ATCGGCCAGA TGCAGAGCAA GATTCACTCG
GCCGTGCAGG TCATGAACGA AAGCCAGATC CAGTCCAATC ATTGCGTGAC GCTGGCCTCC
GGTGCCGATG AGTTGCTGGT GGAAATGAGC GAGGCGGTCG ATACGACTCG TGACATGAAC
ATCCAGATTG CTGCCGCCAC CGAGGAGCAG AGTGCCACTG TGCAGGAAAC CAGCCGCATG
GTCACGCACA TCAGTGATTC TGCACAGCAG GCGGCCGACG GTGCCGAACA GTCTGCCAGC
AGCAGTCAGG ACCTGTCGAA AATGGCCAGG GATCAGCGCG AGCTGCTCCA TCATTTCAGC
GTTTGA
 
Protein sequence
MTVLQRVIGG FAVLVVLLLA MAGISYQSTH SISERISIIT GQSAPLSRAA SELYVHVLRA 
NQALLGILVS TDPKQIDEGK QPFNDSMARF NQLLDSIPAY TGDRAELRDN LNQQRQLSTA
YVEQAQTLIA SHRQHVLQVL QSRVLQGYSN SEGAQLTGYL RDYIARERTT GSSENVAAAE
KLLLEVGKSY EGLAAHAATP DIQTLQRVLN LQDEVISTRA RELTAVDPRG GRIAGVMVNR
LLKDLTGADG VYQAYRQEAA LAEQVGKQRQ AAEARLQATL DKIGEFGNQS LAVANEAKAG
ADSTIATSLS LLLIACLLAV LAAAIIGTWV AFSLRRPLAA FRGVLKTLSG GDMRVRFDVS
RRDEFGELGG YLNEFTQSLQ QTFRELIGSA DTLALTASQN AQVSEQTTRV VDEQKDRLNS
AASAMNEMES TVEEVARRAQ DTRSAVDSTS ELTNKVQKRV AETIVNIRQQ AEQVNKASAV
TDELQKYGQN IDGIVDAIRT IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLASRT
QTSTSEIQEM IGQMQSKIHS AVQVMNESQI QSNHCVTLAS GADELLVEMS EAVDTTRDMN
IQIAAATEEQ SATVQETSRM VTHISDSAQQ AADGAEQSAS SSQDLSKMAR DQRELLHHFS
V