| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2237 |
|---|
| Symbol | |
|---|
| ID | 3367752 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2599432 |
|---|
| End bp | 2601417 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637652587 |
|---|
| Product | histidine kinase, HAMP region: chemotaxis sensory transducer |
|---|
| Protein accession | YP_235318 |
|---|
| Protein GI | 66045477 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.551171 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.645339 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATTC TTCAGCGAGT GATCGGTGGG TTTGCTGTGC TGGTGTTACT GCTGCTCGCC
ATGGCAGGTA TCAGCTATCA AAGCACCCAT TCCATAAGCG ATCGGATCAG CGTCATCACA
GGGCAGTCCG CACCCTTGAG CAGGGCGGCG AGCGAGCTTT ACGTGCATGT GCTGCGCGCC
AACCAGGCAC TGCTCGGGAT TCTGGTCAGC ACTGATCCCA AACAGATCGA TGATGGCAAG
CAGCCGTTCA ACGACAGCAT GACCCGGTTC AATCAGTTGC TGGACAGCAC GCCTGCCTAC
ATTGGCGATC GTGCCGAACT GCGCGACAAC CTGAACCAGC AACGCCAACT GAGTGCGGCT
TATGCCGAGC AGGCGCAGAC GCTGATTGCC AGCCATCGAC AGCACGTTCT GCAGGCACTT
CAGAGCCGAG TGCTGCAGGG CTACAGCAGC AGTCAGGGCG CGCAACTGAC CGGTTATCTT
CGTGACTATA TTGCCCGCGA GCGCAACGCC GGCTCCGCCG AGACGGTGGC GGCGGGGGAA
AAGCTGTTAC TGGACGTCGG CAAATCCTAC GAAGGTCTGG CTGCCCATGC CGCCACACCG
AATATTCAGA CCTTGCAGCG CGTGCTCAAC CTGCAGGATG AGGTGATCAG CACCCGCACA
CGGGAGCTCA TCGCAGCCGA CCCGCGCGCC GGCCGGATTG CCAGCGTGAT GGTCAACCGC
TTGCTGAACG ACCTGACCGG CAGCGACGGC GTTTATCAGG CCTACAGGCA GGAAGCGGCA
CTCGCCGAGC AGGTCGACAA ACAGCGCCAG GCAGCGGAAA CCCGTCTTCA GGCAACGCTG
GGCAAGATTG GCGAGTTCGG CAATCAGTCA CTGGCGGTGG CCAACGAGGC CAAGGCCGGG
GCTGATTCGA CGATTGCCAC CAGCCTTAGC CTGTTGCTGA TCGCCTGCCT GCTGGCCGTC
ATGGCGGCAG CAATCATCGG CACATGGGTC GCCTTCAGCC TTCGTCGCCC TCTGGCTGCG
TTTCGCGAGG TTTTGAAGAC GCTCACCAGT GGCGACATGC GGGTACGTTT CGACGTCAGC
CGCCGCGATG AGTTTGGTGA GTTGGGGGGT TATCTCAATG AATTCACCCA GTCGTTGCAA
CAGACGTTTC GTCAGCTGAT CGGGTCGGCC GACACCCTGG CGCTGACCGC CAGCCAGAAC
GCGCAGATCA GTGAGCAGAC TACCCGCGTG GTCGACGAGC AGAAGGATCG TCTCAACTCT
GCCGCGTCAG CCATGAATGA AATGGAAAGC ACGGTCGAGG AAGTCGCCCG TCGGGCTCAG
GACACTCGTG GCGCGGTGGA CAGCACCAGT GAGTTGACCG GGAAAGTGCA AAAGCGCGTG
GCTGAGACCA TCGTCAACAT TCGCCAGCAG GCTGAGCAGG TCAACAAGGC GTCTGCGGTG
ACCGACGAGT TGCAGAAATA CGGGCAGAAC ATCGACGGCA TCGTCGACGC CATTCGCACC
ATTGCCGAAC AGACCAACCT GCTGGCGCTC AACGCAGCCA TCGAAGCGGC GCGGGCTGGC
GAGCAGGGCA GGGGCTTTGC GGTGGTGGCC GATGAGGTGC GCTCGCTGGC CAGTCGCACC
CAGACCTCCA CCAGCGAGAT CCAGGAAATG ATCGGCCAGA TGCAGAGCAA GATCCATTCG
GCGGTAGAGG TGATGAACGA AAGCCAGATC CAGTCCGACC ATTGCGTGAC ACTGGCCTCC
GGCGCTGATC AATTGCTGGT GGAAATGGGC GAGGCGGTGG ATGTGATTCG CGACATGAAC
ATTCAGATCG CTGCGGCCAC CGAACAGCAA AGCGCGACCG TGCAGGAGAC CAGTCGCATG
GTCACGCACA TCAACGATTC CGCCCAGCAG GCCGCCGACG GTGCCGAGCA ATCGGCAATC
AGCAGTCAGG ACCTGTCAAA AATGGCCAGG GATCAGCGCG AGCTGCTCCA TCATTTCAGC
GTTTAA
|
|---|
| Protein sequence | MTILQRVIGG FAVLVLLLLA MAGISYQSTH SISDRISVIT GQSAPLSRAA SELYVHVLRA
NQALLGILVS TDPKQIDDGK QPFNDSMTRF NQLLDSTPAY IGDRAELRDN LNQQRQLSAA
YAEQAQTLIA SHRQHVLQAL QSRVLQGYSS SQGAQLTGYL RDYIARERNA GSAETVAAGE
KLLLDVGKSY EGLAAHAATP NIQTLQRVLN LQDEVISTRT RELIAADPRA GRIASVMVNR
LLNDLTGSDG VYQAYRQEAA LAEQVDKQRQ AAETRLQATL GKIGEFGNQS LAVANEAKAG
ADSTIATSLS LLLIACLLAV MAAAIIGTWV AFSLRRPLAA FREVLKTLTS GDMRVRFDVS
RRDEFGELGG YLNEFTQSLQ QTFRQLIGSA DTLALTASQN AQISEQTTRV VDEQKDRLNS
AASAMNEMES TVEEVARRAQ DTRGAVDSTS ELTGKVQKRV AETIVNIRQQ AEQVNKASAV
TDELQKYGQN IDGIVDAIRT IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLASRT
QTSTSEIQEM IGQMQSKIHS AVEVMNESQI QSDHCVTLAS GADQLLVEMG EAVDVIRDMN
IQIAAATEQQ SATVQETSRM VTHINDSAQQ AADGAEQSAI SSQDLSKMAR DQRELLHHFS
V
|
|---|
| |