Gene PSPTO_3680 details

Gene Information

• Locus tag: PSPTO_3680
• ID: 1185345
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4145626
• End bp: 4147656
• Gene Length: 2031 bp
• Protein Length: 676 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637395027
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_793454
• Protein GI: 28870835
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCTATTG TATTGCAAGC TAATTTTTAT CACGCTAACT ATCAAGTTAA CCGAATCAGC 
GCCGATTTAC GGACATTCCG GAAAATCAAA GGCACACACG TAATGAGCGC AAAATGGTTG 
GATAACTTGA ACGTCAGCAA GAAGCTCGGG CTGGGCTTCG CCGCTATTTT GCTGGGCGTG 
CTGACCGTCA CCGCTATCGG TTACTCCAGC ACCAACCTGC TGATCGAGCG TCTGGGCAAG 
AGTGGCAAGG TCTCCGAGAT CAAGGCTGAC GTCCTGAACG CCCGCATCGC CGCTCAGGCA 
TATGCCACGG GGCCGAGCGC TGCCGGCGTG CAAACCTACA GCGGCGCGCT GGACACCCTG 
GGCCGCAGTG TCGATCAGGG GCTTGAGGTG TTCGTCGTAT CGAGCAACCT GGCCAGACTG 
CGCGACATCA AGGAGCGGGT GACCGGCCTC AAGCAGACGT TCGATCAACT GGTCGGTATC 
AACCAGAAGA TCGATGACGC ACTCAAGCCG ATCATCAAGG TGTCCGACGA GGTCAGCGCG 
ACCTTCGAGA ACCTGCTGCA AAAGACCATC GACGATACGT TGCGTGCACC GGACGAAACC 
GGCATCAAGC AGGTGAAGAT CGCGGGTGAC CTGCGTAACG GCATGACCAA CTTTCGTCTG 
GTGTTTCGCC GCTACCTGAG TGTGCCGTCC GCCGATAACC GTCAGGCGAC CTACACCTCG 
GCCGATGCGC TGATTGCCCA GGTGGCAGCG GCTCGCAGCC AGTTGCCCGT CGAAGCCAAC 
ATCGCCGTAG ATACCGCGCT CAATGCCTTG AAGCAGTATA AGATGCTGAT GTCTTCGATC 
TCGGAAATGC TCCAGCAAGC CGATCAGGTT CGCGGCAACC TGCAACAGCA ATCCATCGCA 
ACAGCGGCCG TCGCCGATGA CCTGGCGGCC CAGCAGATTG TCAGCGCCAA AAAGGAACAG 
AACACCGCTG TGGTGCAGTT GTTAAGTGTT GCGCTGGTGG TGCTACTGAT TGGTATCTTT 
GCTGCGTTGC TGATCACTCG CCAGATCACC ATTCCGTTGA ACGATACAGT CATCGCCGCG 
CGCCGGATCG CCGACGGTGA CCTGACTCAG GACTCCAGCA CGACCCGTCA GGACGAGCTG 
GGCCTGTTGC AGAACACCAT GCAGCACATG ACCGTTTCCC TGCGCGGCCT GATCGGCGGC 
ATCGGCAACG GTGTCACGCA GATCGCCACA GCCGCCGAGC AGTTGTCGGC TGTCAGCGAA 
CAGACCAGCG CTGGCGTCAC ACTGCAGAAA AACGAAGTCG ACCAGGTCGC CACGGCCATG 
AACGAAATGG CCTCTACCGT CCAGGAGGTG GCGCGCAACA CCGAAGACGC TTCGCGGGCG 
GCCAAACAGG CCAGCGAACG TGCGGCGCAC GGCAGCAGTG TGGTGCAGCA CGCCACGCGG 
GAAATCGGCC AGTTGGCCGG TGAAGTGAAG CAACTGGGCG AAGCCATGCA GCGCCTGACC 
GAAGACAGCA GCAAGATCGG CAGCGTGATC GACGTGATCA AGGCAGTCGC CGAGCAGACA 
AACCTGCTGG CGCTCAACGC CGCCATCGAG GCCGCACGCG CCGGTGAGCA AGGTCGCGGT 
TTTGCCGTAG TGGCCGACGA AGTCCGCTCG CTGGCCCAGC GCACCCAGAA CTCGACCACT 
GAAATCGAAG CACTGATCCT GACCTTGCAA CAAGGCACCG GTGCCGCTTC GGGCCTGATG 
GACGCCAGCC TGCAACGCAC CGAAGGCACC GTGGTACTGG CCCGCCAGGC CGAACAGGCG 
CTGGTGGATA TCAATCAGTC CATCGGCACG ATTGAACAGA TGAGCCAGCA GATTTCCGCC 
GCGGCCGAGC AACAGAGCGC CGTGACCGAC GAAATCAACC GCAGCGTGCT CAGCGTGCGC 
GACATTGCTG ACCAGTCTGC ATCGGCTACC GAGCAGAGCG CCGCCTCGAC GGTAGAGCTG 
GCCCGCCTGG GCAGTGATCT GCAAAGCATG GTTGCGCGTT TCAAGATTTA A 

 

Protein sequence

MAIVLQANFY HANYQVNRIS ADLRTFRKIK GTHVMSAKWL DNLNVSKKLG LGFAAILLGV 
LTVTAIGYSS TNLLIERLGK SGKVSEIKAD VLNARIAAQA YATGPSAAGV QTYSGALDTL 
GRSVDQGLEV FVVSSNLARL RDIKERVTGL KQTFDQLVGI NQKIDDALKP IIKVSDEVSA 
TFENLLQKTI DDTLRAPDET GIKQVKIAGD LRNGMTNFRL VFRRYLSVPS ADNRQATYTS 
ADALIAQVAA ARSQLPVEAN IAVDTALNAL KQYKMLMSSI SEMLQQADQV RGNLQQQSIA 
TAAVADDLAA QQIVSAKKEQ NTAVVQLLSV ALVVLLIGIF AALLITRQIT IPLNDTVIAA 
RRIADGDLTQ DSSTTRQDEL GLLQNTMQHM TVSLRGLIGG IGNGVTQIAT AAEQLSAVSE 
QTSAGVTLQK NEVDQVATAM NEMASTVQEV ARNTEDASRA AKQASERAAH GSSVVQHATR 
EIGQLAGEVK QLGEAMQRLT EDSSKIGSVI DVIKAVAEQT NLLALNAAIE AARAGEQGRG 
FAVVADEVRS LAQRTQNSTT EIEALILTLQ QGTGAASGLM DASLQRTEGT VVLARQAEQA 
LVDINQSIGT IEQMSQQISA AAEQQSAVTD EINRSVLSVR DIADQSASAT EQSAASTVEL 
ARLGSDLQSM VARFKI