Gene VEA_004004 details

Gene Information

• Locus tag: VEA_004004
• ID: 8557740
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio sp. Ex25
• Kingdom: Bacteria
• Replicon accession: NC_013456
• Strand: +
• Start bp: 2651613
• End bp: 2653604
• Gene Length: 1992 bp
• Protein Length: 663 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 646407102
• Product: methyl-accepting chemotaxis protein
• Protein accession: YP_003286629
• Protein GI: 262394775
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAGGTT CAGTTATTAA AAGGATGTAT GCGGGCTTTG CTCTGATCAT CATCCTATTT 
GCCGTCACAA TTGCCATTAT GATGGGAGGA ATGAGTGATA TTCACGGGAA GTTTGGCACC 
GTGTCTAAAT CATCCCTACC ACTGGTATCG TTATCTAACC AAACCAGTGT TGAACTGCTT 
TCTGCCGACA AATCGTTTAA AGATTTTCTG ACGACAGAGA ATAAACAACG CATGGATGAA 
ATGCGTCAGG AATTTGCTAG ATCTCAACAA CGTTTCGAAT CCACTTTGGC TCAACTGGAA 
ACTGCAAGCC AAATCTACCC TTCTCTTGCC GAACCGTTTT CACAATTAAA AACGTTAGAG 
CAGAGCTATT TTACTGAAGC TCTTGAAGCC ATGGACAACT ACGAAGCGAT GTTCGCTGCG 
CAAGAAAAAG TGCAAAAATC GTCACGTCGC TTCCAAAAGC TGAATACCGA ATTGTCGGTC 
GGACTTAAAG AATATGTGGC AGATCAAACC AGCATTTCTG TCAAAGTCAT GGCGAAGAGT 
TACTTCATTA AGCTAAAAGA TGCCGAAGTT ATAACCTCTG ATGCCCTCGC CAGCTCTGAT 
CCTGAGTTTG TTACGCAAGC CGTGACCAAA AACCGCAAAG CAGTGACTCA TTTGAACTAT 
GCTTTCCGTG GTTTAGTTAC TCAATTACCT GAACTAAAAA CAGCATTTGG TGAGTCGGTA 
GAACAATTCA CACGCGACGT GGGAATGCGT GGAGGGGTCT TAGACCAGCA CAATAATTAC 
CTCAATGCTC GTGCAGCGCT ATACAACAAC ATCGCCAACC TAGCGAATAA AGTTGATTCA 
ACCATGGCGA TTCTTGAGCA ATTTACGACA ACCGCAACGG ATAAACTTAA TGAATCGTTA 
GCAGACGCTG GTGACATTTA TTCTGCGGGT GTGACGAAAG CCATCATCAT TGGCGTTGTT 
GTCGTGCTAC TTGCCACAGC GATTGGCTAC CACATCGCGC ATAGCGTTCG CGAACCATTG 
ACTCGTATTC TAAAAGTGCT TGAAAGCCTG ACTGAAGGTG ACATGACAGA ACGTATCGAT 
ATTCGCTATA ACAACGAGTT CAGCCGAGTG AGTGGACACA TTAACTCACT AGCCGACAGT 
CTTCACGAGA TCTTAGTGAA ACTCAACGAA GCGTCAGAGA ACCTATCTTC GACCGCAGCA 
ACAAACGAAA GCACGTCTTC GCAAGCGCAA AGCAAATTAA GCTCACAACG CGAGCAAACA 
GCAAACGTTG CGACCGCAAT GACGGAAATG TCTCACTCAG TGCAAGAAGT CGCTCAAAGT 
GCACAAGGCT CACTAGAAAT GGTGCAGCGT GTCGAATCTG CCTCTGAAGA AGGCAGAAAT 
GTCATGAGCA GCAATATCTC GACCATAAAT CAACTGGAAA CGCGTTTGAA CGAATCCGTT 
TCCGCTGTCT CTGAACTGCA AAAAATGAGT GGTCAAATTG GTTCTATCCT CGATGTGATT 
CGCAACATTG CTGAACAAAC TAACCTACTG GCATTGAATG CAGCAATTGA AGCGGCTCGC 
GCTGGCGAAC AAGGTCGCGG CTTTGCGGTA GTGGCCGATG AGGTGCGTGT GCTTGCATCC 
AGAACCACTC AGTCCACCAC TGAAATTGAA TCGATGATCA GTAATCTGCA ATCCAGCTCT 
CAGTCAGCAA ATCAAGTAAT ACAAAGCTGT ATGAGCGATA TGGAGATGTC TGTTGAGCAA 
GCATCAAAAG CGAACAGCTC AATGGAAGAG ATTCAAGCGC TAATCATCGA AATCAGCCAA 
ATGAGTACGC ATATTTCGCA AGCGGCAGCA GAGCAAAGTG AAACCTCAGC AGACATTGCA 
CGCAGTATTG AAGATATCAA TAGTATCGCC GATGAAAGCT TCCAAGCTAT GTCGAGCATC 
GCACAGACCA GTGAATCCCT GACTCACTTG GCTCATCAGC AGAATGAATT GGTTCACCGC 
TTTAAGTTAT AA 

 

Protein sequence

MRGSVIKRMY AGFALIIILF AVTIAIMMGG MSDIHGKFGT VSKSSLPLVS LSNQTSVELL 
SADKSFKDFL TTENKQRMDE MRQEFARSQQ RFESTLAQLE TASQIYPSLA EPFSQLKTLE 
QSYFTEALEA MDNYEAMFAA QEKVQKSSRR FQKLNTELSV GLKEYVADQT SISVKVMAKS 
YFIKLKDAEV ITSDALASSD PEFVTQAVTK NRKAVTHLNY AFRGLVTQLP ELKTAFGESV 
EQFTRDVGMR GGVLDQHNNY LNARAALYNN IANLANKVDS TMAILEQFTT TATDKLNESL 
ADAGDIYSAG VTKAIIIGVV VVLLATAIGY HIAHSVREPL TRILKVLESL TEGDMTERID 
IRYNNEFSRV SGHINSLADS LHEILVKLNE ASENLSSTAA TNESTSSQAQ SKLSSQREQT 
ANVATAMTEM SHSVQEVAQS AQGSLEMVQR VESASEEGRN VMSSNISTIN QLETRLNESV 
SAVSELQKMS GQIGSILDVI RNIAEQTNLL ALNAAIEAAR AGEQGRGFAV VADEVRVLAS 
RTTQSTTEIE SMISNLQSSS QSANQVIQSC MSDMEMSVEQ ASKANSSMEE IQALIIEISQ 
MSTHISQAAA EQSETSADIA RSIEDINSIA DESFQAMSSI AQTSESLTHL AHQQNELVHR 
FKL