Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_A0106 |
Symbol | |
ID | 1172529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004349 |
Strand | + |
Start bp | 85324 |
End bp | 86964 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637346555 |
Product | methyl-accepting chemotaxis protein |
Protein accession | NP_720432 |
Protein GI | 24376324 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.827543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAAAA ACATGACTTT AGCACAGAGA TTGATCTCTG TTTTTTTTAT TCTTTCTTTA CTTGTTTTGG GGGTAGCTTG GTTTTCAGTT GTTCAACTTG CTGGTTTGCA TAGTAATACA ACTAAAATTA CTGAGAATCT GATCCCTTCT ATTCGTTCGT CCGCTCAAAT GCATATTGCC TTGCTTGATG CACGGCGTAA CGAATTGAAT ATGGTTATTG ACGTGATGAC ACACGATTCC GCAGCAATAG AGATTAGCAA ACAGCGCTTT GAGACAGCCA AAAGCGAATT TGAAGCTGGC GCCCAACAAT ATGCCAAACT GAATTTTGTG TCTGAGCAAG ATGAACAACT GTTTATTAAA CTTGGCGAGG CTGCCGAAAA ATATTTCTCT GCACACTCGT CATTGGTTTC TGCGATTGAC CAAGGAGATA TGGCAAGTGC AAATATAATG ATCAAAACAT TGACCAGACA GACTTTAGAG GTAGCAGGTG AAGAAACGAT GAATTTGCGA CATGAAAATG ATCGCGCTGC ACAGGAGATG GTATTACAGA GTGAGAATGC CTATAAAACA GCCAAAATGC TCAGCATTAT AGTGGGTTTT AGTACAATAT TTTTTGTGGT GGTTATGGCA TTTTTGCTGA TTCGTCAGAT CCAAAACCCC ATAATGTGGT TATTGAAACA AACTCATGAG GTATCTGCTG GCAACTTAAC GAATAAACTC AACATGAATG CGTTTGCCCG TGATGAGTTT GGTCAGTTGG CAGAGAGTTT TAACGAGATG CAAGATAACT TGCATATGTT GGTTAGCGAG GTTTCTAACT CTATAGTACA ACTTAGCTCC GCAGCGGAAG AGATCAGTTC AGTTGCTTTG CATTCTTCCA ACAATATGGA GACTCAGCAA AATGAGTTAA ACCAGTTGGC AACCGCAATG CATGAGATGC AGGCTACTGT GCAAGACGTC GCTCGTAATA CCAACGATGC CGCTAATGCA GCGACACAGG CAAGTGACAC CGCTACACAA GGTAGTGAAA CTGTGAATGA CTCGATTGTA CGAATTGATA AGGTTGCCGG AGCAATAGAA GCAACTGCTG TAGTGATCCG CAAATTAGGA GATGATAGTC GTAATATCGG GATGGTCTTG GAGGTGATCC AAGGTATCGC AGAACAAACC AACTTGTTAG CATTGAATGC GGCCATTGAA GCTGCAAGGG CTGGCGAGCA AGGTAGAGGG TTTGCTGTTG TGGCTGATGA GGTACGAACA CTAGCTAAAC GGACACAGGA CTCAACCTCT CACATCAATA GTATCATTTC TGAATTACAG CTACGGGCCA ATGAAGCAGA GGAAACAATG CAACAAAGCC AAGAGATGAT GATAGAAACT GTTTGCAAGG CAAGAGAAGC TGGTGAGTCG ATTGCTAAAA TAAGCAGCTC AGTGAGTTGT ATTTCTCAAA TGAATATTCA GATTGCTACC GCAACGGAAG AACAGGGAGC CGTAAGCGAA GAGCTAAACC GTAATGTGGC AAATATTAGC GGGGCTTCCG AAGATGTGGC AACCGGCGCG AAACAGATGG CAATGGCATG TAACGATTTA AGTCATCTGG CCACGCAGTT ACAGGATATG GTGAAGAAGT TTCATATTTA A
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Protein sequence | MFKNMTLAQR LISVFFILSL LVLGVAWFSV VQLAGLHSNT TKITENLIPS IRSSAQMHIA LLDARRNELN MVIDVMTHDS AAIEISKQRF ETAKSEFEAG AQQYAKLNFV SEQDEQLFIK LGEAAEKYFS AHSSLVSAID QGDMASANIM IKTLTRQTLE VAGEETMNLR HENDRAAQEM VLQSENAYKT AKMLSIIVGF STIFFVVVMA FLLIRQIQNP IMWLLKQTHE VSAGNLTNKL NMNAFARDEF GQLAESFNEM QDNLHMLVSE VSNSIVQLSS AAEEISSVAL HSSNNMETQQ NELNQLATAM HEMQATVQDV ARNTNDAANA ATQASDTATQ GSETVNDSIV RIDKVAGAIE ATAVVIRKLG DDSRNIGMVL EVIQGIAEQT NLLALNAAIE AARAGEQGRG FAVVADEVRT LAKRTQDSTS HINSIISELQ LRANEAEETM QQSQEMMIET VCKAREAGES IAKISSSVSC ISQMNIQIAT ATEEQGAVSE ELNRNVANIS GASEDVATGA KQMAMACNDL SHLATQLQDM VKKFHI
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