Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0808 |
Symbol | |
ID | 4924278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 925401 |
End bp | 927065 |
Gene Length | 1665 bp |
Protein Length | 554 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640162341 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001092939 |
Protein GI | 127511742 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein [COG4564] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGGCAAT TAAGAATGAA AAATAAGCTG TTGGTATTTG CTCTCCTGCC CCTGATTTTG AGTTTTCTCT TCTTAGTTTC AATCACCTAT AACCTGGAAT CTAACTCCCT CGAAGAGAAT ATGTCGACCT TCAAGGCGAG CCTCTATAGC GAACGTAAGG CGCAGCTAAA GGATCAGGTC GATATCGCCC TGGATATCGT CGAGCATCAG CTCTCCCTGG GGACGGCGGG CGATGTGAAC AAGGCGCTGC GTAACGTGCG CTTCGGCACC GCCGGTTACT TCTTCATCTA TGATTTTGAC GGCTTCAACC GCTTTCATGC GGTCAAGCCT GCGCTGGAGG GTACGGCGCA GATCGGCATG ACAGACCCTA ACGGCAAGAA GATAGTGGTC GGCCTGATCG ATGCCGCCAG AAGCGGCGAT GGTTTCTTCA ACTATGACTA CTCCAAACCT GGGGTCACGG GGCTGGTGCC TAAGATAGGC TACGCCGCAA CCGTGCCGGG TAAAGATTGG ATCTTGGGTA CTGGCGCCTA CACCGACGAT ATCGACGCCC AGGTGGAGAG CTATCGTGAG GTGATGACCA AGCACATGAA CGACAAGGCG ATGATGATTC TGCTCTTTGC CCTGGTGCTG GTGGCGATCA CCGCCGTGGT GATGCTGGTG GCCGCCCAGC GCATGGTCAA CCCGATTCAC AACATGGTGC AGAACCTCGA AGATATCGCC AAGGGTGAGG GGGATCTGAC CAAGCGCCTG GACGTGCAGG GCAGCGATGA GATCGCCATG CTGGGCCGCG CCTTCAACCA GTTTGTCGAT AAGCTGCAGG GGATCATCAA GGATGTGGCC AGGGCCACCG TCGAGGTGAA GAGTGGCGCG GATAACATCT CCTCCCAGAC AGCGGCCATG GCGCAGCAGC TGATCAGCCA CAACAACGAG ACGGATCAGG TGGTTACGGC GATCACCGAG ATGTCGGCGA CCGCTTCAGA GGTGGCCATG AGCACCACTC AGGTGGCCGA GGCGACCCAG GCGGCCACCC AGGATGTGGG CAACGCCCAG GAGTGTGTCG ACAGCTCGCT GCATGAGGTC TCGACCCTGA TGGCGGAGAT CGATATGGCG GCCGGACATA TCAACTCCCT CAACGAGCAG TCACAGAAGA TCAACAGCGT GCTGAGTGTG ATAGGTGGCA TCGCCGAGCA GACTAACCTG CTCGCCCTCA ACGCCGCCAT CGAGGCGGCC CGCGCCGGTG AGCAGGGGCG CGGCTTCGCC GTGGTAGCCG ATGAGGTGCG CAGCCTCGCG AGCCGGACAC AGGCCAGTAC CTTAGAGATC AACGAGATGT TGTCTGAGCT GCATAATCTG GTGTCGCTGG CGGTGAGCAG CATGGAGTCG AGTCAGCAGA GCTGTCATCG CTCGGTGACC TCGTCGCGGG CGATCTCAGA TAGCCTGGGG GCGGTGACCT CGGCGGTGAC ATCGATCAAC GACATGAGTA CCCAGATCGC CACGGCGGCC ACCGAGCAGA GTTCGGTGAC CGAGGAGATC AACCGCAACG TGTTTGCGAT TCAGGAGATC GTCAACGAGC TGCTACAGGC CAGTAATAGC GCCTCGGACA CCAGTCAGGG ACTGGCCAAC GAGGGCCGTA ACCTGGATAC CCTAGTTGGT CAGTTTAAGG TGTAA
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Protein sequence | MWQLRMKNKL LVFALLPLIL SFLFLVSITY NLESNSLEEN MSTFKASLYS ERKAQLKDQV DIALDIVEHQ LSLGTAGDVN KALRNVRFGT AGYFFIYDFD GFNRFHAVKP ALEGTAQIGM TDPNGKKIVV GLIDAARSGD GFFNYDYSKP GVTGLVPKIG YAATVPGKDW ILGTGAYTDD IDAQVESYRE VMTKHMNDKA MMILLFALVL VAITAVVMLV AAQRMVNPIH NMVQNLEDIA KGEGDLTKRL DVQGSDEIAM LGRAFNQFVD KLQGIIKDVA RATVEVKSGA DNISSQTAAM AQQLISHNNE TDQVVTAITE MSATASEVAM STTQVAEATQ AATQDVGNAQ ECVDSSLHEV STLMAEIDMA AGHINSLNEQ SQKINSVLSV IGGIAEQTNL LALNAAIEAA RAGEQGRGFA VVADEVRSLA SRTQASTLEI NEMLSELHNL VSLAVSSMES SQQSCHRSVT SSRAISDSLG AVTSAVTSIN DMSTQIATAA TEQSSVTEEI NRNVFAIQEI VNELLQASNS ASDTSQGLAN EGRNLDTLVG QFKV
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