More than 300 homologs were found in PanDaTox collection
for query gene Cphy_0740 on replicon NC_010001
Organism: Clostridium phytofermentans ISDg



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010001  Cphy_0740  Crp/FNR family transcriptional regulator  100 
 
 
224 aa  460  1e-129  Clostridium phytofermentans ISDg  Bacteria  normal  0.194826  n/a   
 
 
-
 
NC_009012  Cthe_2978  Crp/FNR family transcriptional regulator  44.71 
 
 
235 aa  201  9e-51  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1459  transcriptional regulator, Crp/Fnr family  31.69 
 
 
228 aa  119  3.9999999999999996e-26  Thauera sp. MZ1T  Bacteria  normal  0.351279  n/a   
 
 
-
 
NC_007643  Rru_A1245  Crp/FNR family transcriptional regulator  29.86 
 
 
216 aa  118  7.999999999999999e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.61444  n/a   
 
 
-
 
NC_011831  Cagg_2104  transcriptional regulator, Crp/Fnr family  30.8 
 
 
229 aa  117  1.9999999999999998e-25  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_012039  Cla_0784  transcriptional regulator, Crp/Fnr family  34 
 
 
201 aa  114  1.0000000000000001e-24  Campylobacter lari RM2100  Bacteria  normal  0.706158  n/a   
 
 
-
 
NC_011901  Tgr7_1360  putative transcriptional regulator, Crp/Fnr family  31.35 
 
 
223 aa  114  2.0000000000000002e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_0119  transcriptional regulator, Crp/Fnr family  29.47 
 
 
220 aa  112  6e-24  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.701779  n/a   
 
 
-
 
NC_011206  Lferr_0120  transcriptional regulator, Crp/Fnr family  29.47 
 
 
231 aa  111  7.000000000000001e-24  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1260  Crp/Fnr family transcriptional regulator  32.95 
 
 
230 aa  108  7.000000000000001e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.611189 
 
 
-
 
NC_007298  Daro_3649  cyclic nucleotide-binding: regulatory protein, Crp  27.03 
 
 
222 aa  108  1e-22  Dechloromonas aromatica RCB  Bacteria  normal  0.111908  normal 
 
 
-
 
NC_010505  Mrad2831_4775  Crp/FNR family transcriptional regulator  29.05 
 
 
224 aa  107  1e-22  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1507  transcriptional regulator, Crp/Fnr family  29.15 
 
 
227 aa  103  1e-21  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00368382  n/a   
 
 
-
 
NC_008576  Mmc1_3202  Crp/FNR family transcriptional regulator  26.27 
 
 
220 aa  104  1e-21  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000000322643  normal 
 
 
-
 
NC_008740  Maqu_2052  CRP/FNR family transcriptional regulator  29.57 
 
 
213 aa  104  1e-21  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1280  transcriptional regulator, Crp/Fnr family  31.31 
 
 
223 aa  102  7e-21  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4303  Crp/FNR family transcriptional regulator  29.03 
 
 
224 aa  101  8e-21  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.50399  normal  0.0335378 
 
 
-
 
NC_008043  TM1040_3643  Crp/FNR family transcriptional regulator  32.11 
 
 
221 aa  101  1e-20  Ruegeria sp. TM1040  Bacteria  normal  0.621489  normal 
 
 
-
 
NC_007778  RPB_1158  Crp/FNR family transcriptional regulator  33.14 
 
 
224 aa  96.7  3e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1478 
 
 
-
 
NC_009485  BBta_3690  cyclic nucleotide-binding protein  30.59 
 
 
224 aa  95.5  6e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142322  normal 
 
 
-
 
NC_002950  PG1573  Crp family transcriptional regulator  30 
 
 
283 aa  94.7  1e-18  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_0022  Crp/FNR family transcriptional regulator  24.87 
 
 
229 aa  94.4  1e-18  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2521  transcriptional regulator  29.65 
 
 
225 aa  94  2e-18  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0399516 
 
 
-
 
NC_010524  Lcho_0203  Crp/FNR family transcriptional regulator  25.65 
 
 
247 aa  92  7e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.270076 
 
 
-
 
NC_008599  CFF8240_0428  Crp family transcriptional regulator  30.06 
 
 
201 aa  89.7  3e-17  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3266  CRP/FNR family transcriptional regulator  25.4 
 
 
222 aa  89  5e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1844  CRP/FNR family transcriptional regulator  26.67 
 
 
240 aa  87.8  1e-16  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.128261  normal  0.368407 
 
 
-
 
NC_007493  RSP_2963  Crp/FNR family transcriptional regulator  26.67 
 
 
218 aa  86.7  3e-16  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.281309  n/a   
 
 
-
 
NC_009049  Rsph17029_1610  CRP/FNR family transcriptional regulator  26.67 
 
 
218 aa  86.7  3e-16  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.503286  normal  0.0459235 
 
 
-
 
NC_013730  Slin_6174  transcriptional regulator, Crp/Fnr family  26.99 
 
 
212 aa  82.8  0.000000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_4871  CRP/FNR family transcriptional regulator  28.49 
 
 
208 aa  80.9  0.00000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0245964  n/a   
 
 
-
 
NC_013732  Slin_6930  transcriptional regulator, Crp/Fnr family  29.45 
 
 
211 aa  79.3  0.00000000000004  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2609  transcriptional regulator, Crp/Fnr family  29.7 
 
 
212 aa  77.8  0.0000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.111906 
 
 
-
 
NC_014230  CA2559_11833  transcriptional regulator, Crp family protein  26.05 
 
 
208 aa  73.9  0.000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1297  Crp/FNR family transcriptional regulator  36.36 
 
 
222 aa  65.1  0.0000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1798  transcriptional regulator, Crp/Fnr family  29.92 
 
 
224 aa  65.1  0.0000000009  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.112724  normal  0.701218 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  21.3 
 
 
227 aa  63.9  0.000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12618  transcriptional regulator, Crp family protein  23.2 
 
 
210 aa  63.2  0.000000003  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  24.14 
 
 
232 aa  61.2  0.00000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_013525  Tter_0550  transcriptional regulator, Crp/Fnr family  25.81 
 
 
224 aa  61.2  0.00000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014212  Mesil_0258  transcriptional regulator, Crp/Fnr family  21.89 
 
 
222 aa  60.1  0.00000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  25.62 
 
 
234 aa  58.9  0.00000007  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  24.55 
 
 
236 aa  58.5  0.00000009  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_013093  Amir_5783  transcriptional regulator, Crp/Fnr family  22.22 
 
 
212 aa  58.2  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00268451  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  24.55 
 
 
236 aa  58.2  0.0000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  26.97 
 
 
223 aa  57.8  0.0000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009715  CCV52592_1641  hypothetical protein  25.35 
 
 
215 aa  57.4  0.0000002  Campylobacter curvus 525.92  Bacteria  normal  0.0118775  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  24.42 
 
 
224 aa  57  0.0000002  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_010678  Rpic_4026  cyclic nucleotide-binding protein  23.67 
 
 
234 aa  57  0.0000003  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4138  putative transcriptional regulator, Crp/Fnr family  23.67 
 
 
234 aa  57  0.0000003  Ralstonia pickettii 12D  Bacteria  normal  0.60462  normal 
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  20.37 
 
 
227 aa  56.6  0.0000003  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  20.87 
 
 
236 aa  56.2  0.0000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  21.23 
 
 
226 aa  55.5  0.0000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  22.73 
 
 
236 aa  55.1  0.0000008  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  21.32 
 
 
229 aa  54.3  0.000001  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3468  CRP/FNR family transcriptional regulator  24.6 
 
 
236 aa  54.3  0.000001  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  22.27 
 
 
267 aa  54.7  0.000001  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  26.19 
 
 
232 aa  54.3  0.000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_0691  cyclic nucleotide-binding protein  22.49 
 
 
212 aa  53.5  0.000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2016  Crp/FNR family transcriptional regulator  22.9 
 
 
229 aa  53.9  0.000002  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.0776172  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  21.36 
 
 
222 aa  53.9  0.000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  22.22 
 
 
225 aa  53.1  0.000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  22.16 
 
 
222 aa  52.8  0.000004  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  21.54 
 
 
227 aa  52.4  0.000005  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  22.27 
 
 
231 aa  52.4  0.000005  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_009972  Haur_2884  Crp/FNR family transcriptional regulator  32.14 
 
 
218 aa  52.4  0.000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.161359  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  19.4 
 
 
229 aa  52  0.000008  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  22.83 
 
 
348 aa  52  0.000008  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  21.26 
 
 
227 aa  51.2  0.00001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  22.67 
 
 
218 aa  51.2  0.00001  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_011831  Cagg_1896  cyclic nucleotide-binding protein  19.91 
 
 
218 aa  51.2  0.00001  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  20.96 
 
 
254 aa  51.6  0.00001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  20.45 
 
 
233 aa  51.2  0.00001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  20.45 
 
 
233 aa  51.2  0.00001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  23.59 
 
 
352 aa  51.2  0.00001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  20.74 
 
 
233 aa  51.2  0.00001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0388  cAMP-regulatory protein  23.81 
 
 
212 aa  51.6  0.00001  Psychromonas ingrahamii 37  Bacteria  normal  0.0189183  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  21.66 
 
 
231 aa  50.8  0.00002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  22.61 
 
 
231 aa  50.8  0.00002  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_007948  Bpro_2580  Crp/FNR family transcriptional regulator  20.67 
 
 
231 aa  50.8  0.00002  Polaromonas sp. JS666  Bacteria  normal  normal  0.117752 
 
 
-
 
NC_009717  Xaut_4828  cyclic nucleotide-binding protein  27.72 
 
 
229 aa  50.8  0.00002  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0724019 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  22.05 
 
 
225 aa  50.4  0.00002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2084  cyclic nucleotide-binding  24.16 
 
 
230 aa  50.4  0.00002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  21.89 
 
 
242 aa  50.1  0.00003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007406  Nwi_0555  transcriptional regulatory protein  26.09 
 
 
252 aa  50.1  0.00003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0885845  normal 
 
 
-
 
NC_012039  Cla_0689  conserved hypothetical protein, putative transcriptional regulator  24.74 
 
 
200 aa  50.1  0.00003  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  21.5 
 
 
243 aa  49.7  0.00003  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  21.68 
 
 
243 aa  49.7  0.00003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_013223  Dret_1233  transcriptional regulator, Crp/Fnr family  22.64 
 
 
225 aa  49.3  0.00004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0234193  normal  0.501568 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  25.59 
 
 
248 aa  49.7  0.00004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_4595  CRP/FNR family transcriptional regulator  23.46 
 
 
229 aa  49.3  0.00004  Xanthobacter autotrophicus Py2  Bacteria  normal  0.596625  normal  0.548543 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  23.15 
 
 
219 aa  49.3  0.00004  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_008048  Sala_1169  Crp/FNR family transcriptional regulator  24.02 
 
 
227 aa  49.7  0.00004  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.0303416  normal  0.0506186 
 
 
-
 
NC_012560  Avin_46100  cAMP-regulatory protein  22.73 
 
 
215 aa  49.3  0.00004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5713  transcriptional regulator  24.71 
 
 
224 aa  49.3  0.00005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.590376  normal 
 
 
-
 
NC_007964  Nham_0645  CRP/FNR family transcriptional regulator  26.8 
 
 
259 aa  49.3  0.00005  Nitrobacter hamburgensis X14  Bacteria  normal  0.526401  n/a   
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  25.93 
 
 
230 aa  49.3  0.00005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2139  transcriptional regulator, Crp/Fnr family  26.02 
 
 
230 aa  48.9  0.00006  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  17.67 
 
 
236 aa  48.9  0.00006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  20.18 
 
 
226 aa  48.9  0.00006  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
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