Gene Dret_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1279 
Symbol 
ID8419107 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1499143 
End bp1499826 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content59% 
IMG OID645037854 
Producttranscriptional regulator, Crp/Fnr family 
Protein accessionYP_003198145 
Protein GI258405403 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0123359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.583782 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAACAA CCCAGACATT GCGCCAGGCA CCGCTTTTCA CCGGCCTGAC CGACGAGCAG 
CTGGAACGGT TGCAGGGCAT CAGCCAACGC CTCAGTTTTG AACGCGGCCA GACCATTTTT
TCCGAAGGAA CGGAAGCCGC CGGGTTCTAC GTCGTCTTGT CCGGACGGAT CAAGATCTTC
AAACTCTCTC TGGAAGGCAA GGCACAGATC CTGCACATCT TCGGTCGGGG CGAACCGGTC
GGCGAAGTGC CCGTCTTTGC CGGACAGACT TTTCCAGCCA ACGGCGAAGC CCTGGAGAAG
GCCGAAGTGG CCTTTTTCCC GCGCAGGAAG CTGCTCGAGC TCTACACCTC TGATCCCTCG
CTGGCCATGA ATATGCTTGC GGTTCTGAGC CAGCGGCTGC GCGAGTTCAC CAGGTTGATC
GAAAACCTGT CCCTCAAGGA AATCCCTCAA CGGCTGGCCG CCTATCTCGT CGAGCGCCAG
CATCAGCTCC CGGAGACAAG CGACGTGACC CTGGACGTCT CCAAAGGGGT TCTGGCCAAG
ATCCTCGGGA CCTCCCAGGA GACCTTGTCC CGAATTTTAA ACAAGCTGAG CGAGGCCGGC
ATCATCCAGG TCAAAGGACG CCGGATCAGC ATTCTGGACC CCGATCAACT CGAAGAGGTC
GCCGAGGGGG AGATCCGGCT CTAA
 
Protein sequence
METTQTLRQA PLFTGLTDEQ LERLQGISQR LSFERGQTIF SEGTEAAGFY VVLSGRIKIF 
KLSLEGKAQI LHIFGRGEPV GEVPVFAGQT FPANGEALEK AEVAFFPRRK LLELYTSDPS
LAMNMLAVLS QRLREFTRLI ENLSLKEIPQ RLAAYLVERQ HQLPETSDVT LDVSKGVLAK
ILGTSQETLS RILNKLSEAG IIQVKGRRIS ILDPDQLEEV AEGEIRL