More than 300 homologs were found in PanDaTox collection
for query gene Slin_3553 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  100 
 
 
348 aa  710    Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  64.39 
 
 
350 aa  455  1e-127  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  51.44 
 
 
352 aa  347  2e-94  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  49.86 
 
 
354 aa  344  2e-93  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  48.74 
 
 
355 aa  336  5e-91  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  48.48 
 
 
352 aa  308  5.9999999999999995e-83  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  60 
 
 
365 aa  154  2.9999999999999998e-36  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_0463  response regulator receiver modulated diguanylate phosphodiesterase  52.38 
 
 
403 aa  149  7e-35  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0584  response regulator receiver protein  54.26 
 
 
216 aa  148  2.0000000000000003e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.0767221  normal 
 
 
-
 
NC_007413  Ava_0648  diguanylate phosphodiesterase  52.38 
 
 
403 aa  144  3e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.215101 
 
 
-
 
NC_007413  Ava_0649  response regulator receiver Signal transduction histidine kinase  50 
 
 
387 aa  137  3.0000000000000003e-31  Anabaena variabilis ATCC 29413  Bacteria  normal  0.736737  normal  0.226718 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  35.78 
 
 
236 aa  133  6e-30  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_011729  PCC7424_2022  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  51.94 
 
 
589 aa  132  6.999999999999999e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  55.93 
 
 
247 aa  132  7.999999999999999e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0065  response regulator receiver domain-containing protein  51.24 
 
 
196 aa  130  5.0000000000000004e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.670969  normal  0.0252366 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  48.82 
 
 
204 aa  127  2.0000000000000002e-28  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  48.84 
 
 
265 aa  125  1e-27  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_007413  Ava_4889  two component AraC family transcriptional regulator  49.22 
 
 
288 aa  122  9e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  0.298891  hitchhiker  0.00503781 
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  45.83 
 
 
394 aa  120  3.9999999999999996e-26  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_014248  Aazo_3807  AraC family two component transcriptional regulator  48.33 
 
 
289 aa  115  1.0000000000000001e-24  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  48.2 
 
 
234 aa  113  4.0000000000000004e-24  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  43.33 
 
 
1341 aa  110  4.0000000000000004e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  45.31 
 
 
248 aa  107  3e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  32.74 
 
 
226 aa  107  3e-22  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  32.16 
 
 
227 aa  107  4e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0789  response regulator receiver protein  36.61 
 
 
278 aa  105  1e-21  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  39.67 
 
 
236 aa  104  2e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  44.27 
 
 
403 aa  103  4e-21  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_012850  Rleg_2665  response regulator receiver protein  46.46 
 
 
133 aa  103  5e-21  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0531061  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  32.77 
 
 
226 aa  102  1e-20  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1110  two component transcriptional regulator, winged helix family  43.55 
 
 
234 aa  102  1e-20  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  42.15 
 
 
310 aa  100  3e-20  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  41.8 
 
 
242 aa  100  3e-20  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  42.37 
 
 
242 aa  100  3e-20  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  41.03 
 
 
1651 aa  100  4e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  46.22 
 
 
234 aa  100  4e-20  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  39.83 
 
 
216 aa  99.8  6e-20  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  39.83 
 
 
216 aa  99.8  6e-20  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  39.83 
 
 
231 aa  99  1e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  42.37 
 
 
228 aa  99  1e-19  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  30.43 
 
 
225 aa  98.6  1e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  47.93 
 
 
233 aa  98.6  1e-19  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009976  P9211_01871  two-component response regulator  42.62 
 
 
242 aa  99  1e-19  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3190  twitching motility, CheY-like protein  42.48 
 
 
141 aa  99  1e-19  Methylibium petroleiphilum PM1  Bacteria  normal  0.510228  normal  0.242476 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  43.8 
 
 
230 aa  98.2  2e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_008025  Dgeo_2199  response regulator receiver/SARP domain-containing protein  40.5 
 
 
344 aa  98.2  2e-19  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.425276 
 
 
-
 
NC_011369  Rleg2_2336  response regulator receiver protein  45.53 
 
 
133 aa  98.2  2e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.103968  normal  0.760096 
 
 
-
 
NC_003909  BCE_3179  DNA-binding response regulator VicR  45.22 
 
 
226 aa  97.4  3e-19  Bacillus cereus ATCC 10987  Bacteria  normal  0.0879082  n/a   
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  43.8 
 
 
230 aa  97.4  3e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  40.68 
 
 
1180 aa  97.4  3e-19  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.37 
 
 
231 aa  97.8  3e-19  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  39.2 
 
 
225 aa  97.8  3e-19  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_009972  Haur_1488  two component transcriptional regulator  42.86 
 
 
228 aa  97.1  4e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00208742  n/a   
 
 
-
 
NC_011729  PCC7424_2795  response regulator receiver protein  40 
 
 
121 aa  97.1  4e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011655  BCAH187_C0255  DNA-binding response regulator  45.22 
 
 
226 aa  97.1  4e-19  Bacillus cereus AH187  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  39.2 
 
 
225 aa  97.1  4e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_009767  Rcas_0960  two component transcriptional regulator  45.38 
 
 
236 aa  96.7  5e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0214647 
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  38.84 
 
 
370 aa  96.7  5e-19  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  42.15 
 
 
236 aa  96.7  6e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009972  Haur_2358  two component transcriptional regulator  40.3 
 
 
231 aa  96.3  6e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0136772  n/a   
 
 
-
 
NC_013132  Cpin_2355  response regulator receiver protein  48.54 
 
 
129 aa  96.3  7e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_2107  two component LuxR family transcriptional regulator  41.8 
 
 
245 aa  96.3  7e-19  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007516  Syncc9605_2427  two component LuxR family transcriptional regulator  42.37 
 
 
245 aa  96.3  7e-19  Synechococcus sp. CC9605  Bacteria  normal  0.27075  normal 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  40.5 
 
 
212 aa  96.3  7e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  31.05 
 
 
228 aa  96.3  7e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  38.58 
 
 
236 aa  95.9  8e-19  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  41.53 
 
 
235 aa  95.9  8e-19  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  31.91 
 
 
231 aa  96.3  8e-19  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  28.27 
 
 
238 aa  95.9  9e-19  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  31.13 
 
 
226 aa  95.9  1e-18  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_007413  Ava_1498  two component transcriptional regulator  40.5 
 
 
247 aa  95.5  1e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.220919  normal 
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  44.07 
 
 
230 aa  95.5  1e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5511  two component transcriptional regulator  46.28 
 
 
236 aa  95.5  1e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal  0.567595 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  38.84 
 
 
235 aa  95.5  1e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  39.67 
 
 
232 aa  95.5  1e-18  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  42.86 
 
 
247 aa  95.9  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_007520  Tcr_2068  multi-sensor hybrid histidine kinase  42.98 
 
 
948 aa  95.5  1e-18  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  27.42 
 
 
226 aa  95.1  1e-18  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4456  PAS/PAC sensor hybrid histidine kinase  39.26 
 
 
1415 aa  95.5  1e-18  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_5323  transcriptional regulator two component heavy metal regulatory response ZniR  44.8 
 
 
206 aa  95.5  1e-18  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.844748 
 
 
-
 
NC_011830  Dhaf_1529  two component transcriptional regulator, winged helix family  40 
 
 
228 aa  95.1  1e-18  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  42.98 
 
 
236 aa  95.5  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_009523  RoseRS_0702  response regulator receiver modulated metal dependent phosphohydrolase  40.17 
 
 
331 aa  95.5  1e-18  Roseiflexus sp. RS-1  Bacteria  normal  0.140022  normal 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  37.9 
 
 
215 aa  95.5  1e-18  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_008687  Pden_3311  response regulator receiver protein  39.52 
 
 
321 aa  95.5  1e-18  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  45.08 
 
 
232 aa  95.5  1e-18  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_3485  two component transcriptional regulator  43.85 
 
 
236 aa  95.1  2e-18  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_7104  multi-sensor hybrid histidine kinase  41.88 
 
 
1646 aa  94.7  2e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  30.53 
 
 
226 aa  94.7  2e-18  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  42.86 
 
 
201 aa  94.7  2e-18  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0145131 
 
 
-
 
NC_012560  Avin_17800  response regulator, transcriptional regulatory protein (two-component), ColR  44.92 
 
 
227 aa  94.7  2e-18  Azotobacter vinelandii DJ  Bacteria  normal  0.0435874  n/a   
 
 
-
 
NC_013132  Cpin_3745  response regulator receiver sensor signal transduction histidine kinase  39.2 
 
 
1010 aa  94.7  2e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.412805  hitchhiker  0.00597184 
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  39.55 
 
 
231 aa  94.7  2e-18  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0783  two component transcriptional regulator  48.28 
 
 
231 aa  95.1  2e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  42.86 
 
 
201 aa  94.7  2e-18  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0341229 
 
 
-
 
NC_013730  Slin_2657  response regulator receiver protein  40.68 
 
 
128 aa  94.7  2e-18  Spirosoma linguale DSM 74  Bacteria  normal  0.0140925  normal  0.150861 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  40.68 
 
 
231 aa  95.1  2e-18  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  40 
 
 
225 aa  94.4  3e-18  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  34.88 
 
 
221 aa  94  3e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_013501  Rmar_0589  response regulator receiver modulated serine phosphatase  38.28 
 
 
371 aa  94  3e-18  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
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