More than 300 homologs were found in PanDaTox collection
for query gene GSU1102 on replicon NC_002939
Organism: Geobacter sulfurreducens PCA



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1102  DNA-binding response regulator  100 
 
 
225 aa  450  1.0000000000000001e-126  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  83.56 
 
 
225 aa  393  1e-108  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_007517  Gmet_2693  two component transcriptional regulator  84 
 
 
226 aa  386  1e-106  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.575064 
 
 
-
 
NC_009483  Gura_2556  two component transcriptional regulator  80.44 
 
 
225 aa  357  9.999999999999999e-98  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.000000044969  n/a   
 
 
-
 
NC_011146  Gbem_1865  two component transcriptional regulator, winged helix family  72.32 
 
 
226 aa  342  2e-93  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1271  two component transcriptional regulator, winged helix family  75.56 
 
 
225 aa  342  2e-93  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_2952  two component transcriptional regulator, winged helix family  75.56 
 
 
225 aa  341  5e-93  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1846  two component transcriptional regulator, winged helix family  72.77 
 
 
226 aa  332  3e-90  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2513  two component transcriptional regulator, winged helix family  70.09 
 
 
225 aa  325  3e-88  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  67.4 
 
 
226 aa  308  2.9999999999999997e-83  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_008609  Ppro_3155  two component transcriptional regulator  65.33 
 
 
228 aa  292  3e-78  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2387  two component transcriptional regulator  54.91 
 
 
229 aa  251  6e-66  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.00115026  n/a   
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  54.71 
 
 
230 aa  246  2e-64  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  52.68 
 
 
227 aa  244  8e-64  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  53.81 
 
 
230 aa  243  1.9999999999999999e-63  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  53.36 
 
 
230 aa  242  3e-63  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_013440  Hoch_6002  two component transcriptional regulator, winged helix family  54.42 
 
 
243 aa  241  5e-63  Haliangium ochraceum DSM 14365  Bacteria  normal  0.472724  normal 
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  52.23 
 
 
225 aa  241  7.999999999999999e-63  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_008554  Sfum_2892  two component transcriptional regulator  52.73 
 
 
227 aa  240  1e-62  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.0239565 
 
 
-
 
NC_008576  Mmc1_1491  two component transcriptional regulator  52.44 
 
 
236 aa  240  1e-62  Magnetococcus sp. MC-1  Bacteria  normal  decreased coverage  0.00391258 
 
 
-
 
NC_013173  Dbac_2662  two component transcriptional regulator, winged helix family  52.94 
 
 
231 aa  239  2e-62  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1911  two component transcriptional regulator  52.44 
 
 
229 aa  239  2.9999999999999997e-62  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.258551 
 
 
-
 
NC_011059  Paes_0769  two component transcriptional regulator, winged helix family  53.6 
 
 
236 aa  238  5.999999999999999e-62  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  53.12 
 
 
231 aa  237  1e-61  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_011769  DvMF_0882  two component transcriptional regulator, winged helix family  50.89 
 
 
230 aa  236  2e-61  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.148935 
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  48.5 
 
 
235 aa  234  6e-61  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0467  two component transcriptional regulator, winged helix family  51.8 
 
 
230 aa  234  6e-61  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_008639  Cpha266_0880  two component transcriptional regulator  50.22 
 
 
236 aa  226  1e-58  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0632  two component transcriptional regulator  50.44 
 
 
236 aa  225  3e-58  Chlorobium luteolum DSM 273  Bacteria  normal  0.883969  normal 
 
 
-
 
NC_010831  Cphamn1_1694  two component transcriptional regulator, winged helix family  50.67 
 
 
236 aa  225  4e-58  Chlorobium phaeobacteroides BS1  Bacteria  normal  decreased coverage  0.0000906935 
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  49.56 
 
 
231 aa  224  7e-58  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  47.62 
 
 
232 aa  223  2e-57  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_1893  two component transcriptional regulator  50.45 
 
 
235 aa  222  3e-57  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.203788 
 
 
-
 
NC_010803  Clim_0772  two component transcriptional regulator, winged helix family  48.88 
 
 
233 aa  222  4.9999999999999996e-57  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  50.66 
 
 
234 aa  221  9e-57  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_011060  Ppha_1701  two component transcriptional regulator, winged helix family  48.23 
 
 
236 aa  220  1.9999999999999999e-56  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  49.56 
 
 
226 aa  218  7.999999999999999e-56  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_010571  Oter_2550  two component transcriptional regulator  52.27 
 
 
228 aa  216  2e-55  Opitutus terrae PB90-1  Bacteria  normal  normal  0.0605198 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  48.21 
 
 
234 aa  213  1.9999999999999998e-54  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  49.12 
 
 
226 aa  212  3.9999999999999995e-54  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  49.78 
 
 
228 aa  212  3.9999999999999995e-54  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  50 
 
 
228 aa  211  7e-54  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  50 
 
 
228 aa  211  7e-54  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  50 
 
 
228 aa  211  7e-54  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  48.91 
 
 
239 aa  211  7.999999999999999e-54  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_010424  Daud_1897  two component transcriptional regulator  53.51 
 
 
227 aa  211  1e-53  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.151466  n/a   
 
 
-
 
NC_010184  BcerKBAB4_5259  two component transcriptional regulator  48.46 
 
 
235 aa  210  1e-53  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000559572  n/a   
 
 
-
 
NC_010655  Amuc_1110  two component transcriptional regulator, winged helix family  47.09 
 
 
234 aa  211  1e-53  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  48.25 
 
 
231 aa  211  1e-53  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.37 
 
 
226 aa  209  2e-53  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_011725  BCB4264_A5589  DNA-binding response regulator YycF  48.46 
 
 
235 aa  210  2e-53  Bacillus cereus B4264  Bacteria  normal  0.0469644  n/a   
 
 
-
 
NC_011772  BCG9842_B5346  DNA-binding response regulator YycF  48.46 
 
 
235 aa  210  2e-53  Bacillus cereus G9842  Bacteria  hitchhiker  0.000000234523  hitchhiker  0.00000000000323141 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  47.39 
 
 
236 aa  209  2e-53  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  48.25 
 
 
229 aa  209  2e-53  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_5615  DNA-binding response regulator YycF  48.46 
 
 
235 aa  209  3e-53  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS5319  DNA-binding response regulator YycF  48.46 
 
 
235 aa  209  3e-53  Bacillus anthracis str. Sterne  Bacteria  normal  0.169223  n/a   
 
 
-
 
NC_005957  BT9727_5147  response regulator  48.46 
 
 
235 aa  209  3e-53  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00168683  n/a   
 
 
-
 
NC_006274  BCZK5163  response regulator  48.46 
 
 
235 aa  209  3e-53  Bacillus cereus E33L  Bacteria  hitchhiker  0.00196509  n/a   
 
 
-
 
NC_011658  BCAH187_A5650  DNA-binding response regulator YycF  48.46 
 
 
235 aa  209  3e-53  Bacillus cereus AH187  Bacteria  hitchhiker  0.00563499  n/a   
 
 
-
 
NC_007530  GBAA_5715  DNA-binding response regulator YycF  48.46 
 
 
235 aa  209  3e-53  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.656882  n/a   
 
 
-
 
NC_009674  Bcer98_4006  two component transcriptional regulator  48.46 
 
 
235 aa  209  3e-53  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.010356  n/a   
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  50 
 
 
227 aa  209  3e-53  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_011773  BCAH820_5572  DNA-binding response regulator YycF  48.46 
 
 
235 aa  209  3e-53  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.81316e-29 
 
 
-
 
NC_009486  Tpet_1136  two component transcriptional regulator  48.07 
 
 
239 aa  208  4e-53  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000652217  n/a   
 
 
-
 
NC_010483  TRQ2_1174  two component transcriptional regulator  48.07 
 
 
239 aa  208  4e-53  Thermotoga sp. RQ2  Bacteria  normal  0.0181894  n/a   
 
 
-
 
NC_007514  Cag_0435  two component transcriptional regulator  47.98 
 
 
253 aa  208  5e-53  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.583358  n/a   
 
 
-
 
NC_014158  Tpau_0654  two component transcriptional regulator, winged helix family  50.64 
 
 
229 aa  208  6e-53  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.200991  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  48.68 
 
 
230 aa  207  7e-53  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  50 
 
 
229 aa  207  1e-52  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_008532  STER_1116  DNA-binding response regulator  47.23 
 
 
235 aa  207  1e-52  Streptococcus thermophilus LMD-9  Bacteria  normal  0.310768  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  48.92 
 
 
228 aa  207  1e-52  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_011898  Ccel_3394  two component transcriptional regulator, winged helix family  49.56 
 
 
230 aa  206  2e-52  Clostridium cellulolyticum H10  Bacteria  normal  0.103692  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0329  two component transcriptional regulator, winged helix family  46.29 
 
 
231 aa  206  2e-52  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  49.35 
 
 
228 aa  207  2e-52  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  49.33 
 
 
236 aa  206  2e-52  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  48.26 
 
 
231 aa  204  9e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1601  DNA-binding response regulator ResD  50.22 
 
 
250 aa  204  1e-51  Bacillus cereus ATCC 10987  Bacteria  normal  0.953648  n/a   
 
 
-
 
NC_005945  BAS1386  DNA-binding response regulator ResD  50.22 
 
 
238 aa  204  1e-51  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1359  response regulator  50.22 
 
 
238 aa  204  1e-51  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0319788  n/a   
 
 
-
 
NC_011658  BCAH187_A1637  DNA-binding response regulator ResD  50.22 
 
 
250 aa  204  1e-51  Bacillus cereus AH187  Bacteria  normal  0.0246031  n/a   
 
 
-
 
NC_006274  BCZK1358  response regulator  50.22 
 
 
238 aa  204  1e-51  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1497  DNA-binding response regulator ResD  50.22 
 
 
238 aa  204  1e-51  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.862661  n/a   
 
 
-
 
NC_011773  BCAH820_1569  DNA-binding response regulator ResD  50.22 
 
 
250 aa  204  1e-51  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.45334e-32 
 
 
-
 
NC_007908  Rfer_0578  two component transcriptional regulator  47.96 
 
 
240 aa  204  1e-51  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  48.89 
 
 
231 aa  204  1e-51  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  48.5 
 
 
226 aa  204  1e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  48.25 
 
 
226 aa  203  1e-51  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4913  two component transcriptional regulator  46.19 
 
 
231 aa  203  2e-51  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.121364 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  50.67 
 
 
237 aa  203  2e-51  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1944  two component transcriptional regulator  46.09 
 
 
238 aa  203  2e-51  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  47.6 
 
 
229 aa  203  2e-51  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  45.29 
 
 
225 aa  202  2e-51  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2201  two component transcriptional regulator  45.91 
 
 
242 aa  203  2e-51  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.153982  normal 
 
 
-
 
NC_009632  SaurJH1_0018  response regulator receiver  45.26 
 
 
233 aa  202  3e-51  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  48.46 
 
 
231 aa  202  3e-51  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_009487  SaurJH9_0018  two component transcriptional regulator  45.26 
 
 
233 aa  202  3e-51  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.70243  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1399  two component transcriptional regulator  49.35 
 
 
238 aa  202  3e-51  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.129694  n/a   
 
 
-
 
NC_011725  BCB4264_A1531  DNA-binding response regulator ResD  49.78 
 
 
238 aa  202  3e-51  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  47.37 
 
 
229 aa  202  3e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011772  BCG9842_B3814  DNA-binding response regulator ResD  49.78 
 
 
238 aa  202  3e-51  Bacillus cereus G9842  Bacteria  normal  hitchhiker  3.95849e-16 
 
 
-
 
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