Gene Cpin_3745 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_3745 
Symbol 
ID8359913 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp4706823 
End bp4709855 
Gene Length3033 bp 
Protein Length1010 aa 
Translation table11 
GC content48% 
IMG OID644965914 
Productresponse regulator receiver sensor signal transduction histidine kinase 
Protein accessionYP_003123408 
Protein GI256422755 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.412805 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00597184 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAACTAA CCAAGACCGT AACCCCTGAA TTCCTCACCG GCGGCGGTGA AATGGGGGAA 
TTGATTCGCT CCAGGGATTG GTCTAAAACG CCATTAGGAC CTGTTGAAGC GTGGCCTCAA
AGTTTGAAGA CCTGTGTGCG TATTATGCTT ACTTCACGGC AACCCATGTT TGTATGGTGG
GGCGGCGACC TGATTAACCT GTATAACGAT GCATATAGAA GTATTCTCGG CGGAAAACAC
CCTGCCGTGC TGGGAAGTCC TGCCAGTGAG GTATGGACGG AAATATGGGA CCAGGTAGGT
CCCAGGGCAG AAGTGTGTAT GCAGCAGAAT GTTGGCACAT ATGATGAATC ATTGCTGCTA
CTGATGGAGC GGAATGGGTA TCCTGAAGAA ACCTACTACA CGTTTTCATA TAGTCCGGTG
CCTGGAGATG AAGGCGGCAC CAGCGGTATT ATCTGCGCCA ATACTGACGA TACACAACGT
ATCCTTGGTG AAAGACAATT ACGTACGTTG AAAGATCTGG GTAGATACCT GGCGGAAGCA
AAAGATGATG CAGATGTATA TAACCGCGCT GTAGAAATAT TAAAAGAAAA CCCGGCAGAT
TTCCCTTTTG CCTGTTTTTA CGAACTCAGT ATACAGACCG GCACCCTGAA CATGACGGCG
AAAACAGATG AACTGTTGTC CACAGATATC CTGCCGCAAG AGCTTATCCT GGAGAGTACG
ATTGCTGACG ACTGGCAGTT TCCCTACGTG ATAACGCATA ACCGTGCGGC CAGGATCGAG
GAGCTTCAGG CGAAATATGG ACAACTGCCT TCTGGTTGCT GGACGATCAG TCCGGACCAG
GCACTCGTGA TTCCTGTGAT GCAAAACGGA CAGGATTGTC CTTTTGCATT GCTCATCGTA
GGTATTAATC CGCACCGGCA ACTGGATGAA AAATACACCA GTTTTTTTCA GCTGGTCGCC
GATCAGATCG CGGGTAGTAT TGTAAATGTG CATACAGTAG AAGAAGCCCG AAAAAGGGCG
GAAGCGCTGC TGGAAATAGA CCGGGCAAAA ACCGCCTTTT TCAGTAATAT CAGTCACGAG
TTCCGCACAC CATTGACGCT GATGCTGGGG CCACTGGAGG AATTGTTGTC TCAACAGGAT
GGTGTACTGA CTAAGCAGCA GGAAGCCAAT GTCACCGCTA CTCACCGTAA TGCTATGCGC
TTGCTGCGAC TGGTAAATAC GCTGCTCGAT TTCAGCCGTA TTGAAGCGGA TAAAGTCAGG
GCACAGTATT TTCCGGTAAA CCTCAGCGAC GTGACGACGG ATATCGCCAG TACGTTCAGA
GCAGCAGTGG AACATGCAGG ATTGGAATTC AATGTGACGT GTAAGGACCT CTCTATGGCT
GCTTATGTTG ACCGCGATAT GTGGGAGAAG GTTATCCTGA ATCTCTTATC CAACGCCTTT
AAATATACCT TACAGGGGAG CATCAGTGTG ATCCTGGAGG AAAGCGATCA ACACGCCATA
TTGCTTGTAC GTGATACTGG CGTAGGTATT CCGGTGTCGG AACTGCCTAA CATGTTTGAG
CGTTTCCATC GGGTAAAACA AAGTAAAGGC CGCTCCTTTG AAGGAACTGG TATCGGTCTT
TCACTCGTGC GGGAGCTGGT ACAACTGCAC AACGGCGATA TCAGTGTGGA GAGCGAGGAA
GGGAAAGGCA GTACGTTTGC CGTAAAGATA CCGCTGGGAA GAGCGCATTT GCCGGAAGAG
CAGGTGGTAG AAAATGCAGG TGCAGGTACT AACCAGACAC CCGGACTTAG TGCCGCTTAT
GTCAATGAGG CCATGTATTT CAACCGCCAG CAGGATAGCA ATGGCATCGA TATCGATAGG
ATTGAAGAAG GAGAAGAAAG AGCGCGTGTC CTGATCGTGG ATGATAATGC TGATATGCGC
GACTATCTGC AACGCCTGCT TGAAAAACAA TATTACATCG AAACAGCCGC CAACGGAAAA
CTGGCGCTGG AAAAGATAGC AACACATCAG CCTGAACTGA TCATCAGTGA TGTGATGATG
CCGGAAATGG ATGGTATCGA ACTGTTGCAT CATGTAAAAC ATAACCCTGC AACGGAGTCA
TTACCAGTGA TCCTGGTGTC TGCCAGGGCA GGTGAGGAAG CGACTATTGA AGGCTATGAT
ATTGGTGCGG ATGATTACCT GACAAAACCA TTTTCCGCCA AAGAATTACA GGCAAGGGTA
CGTGCACAGA TCAGGGTATC CCGGCTGCAC CGACATGCGC TGGACATCTT ACAACATAGT
GCAGAGGAAC TGGAAAAGAA GGTAGAAGCA CGTACTTCTG AGCTATTACG AAAAAACTCG
GAACTGGAGC AGTTTGCCTA TATCGCCAGT CATGATTTGC AGGAACCACT ACGTAAGATC
AGAACCTTCT CTGAGTTGTT GCAGAAAAGT CTGCAGAAAG GGAATCCCGT TAATAATTAC
TTTGATAAGA TCCAGTCATC CGCAGAAAGG ATGACGCAAC TGATCAAAGA CGTGCTGGAT
TATTCCCGTC TCTCCAACAC GGAAGAGAAG TTTGTTCCGA TCGATCTGAA CACGATATTA
CAACAGGTAA AAGGCGATTT TGACCTGCTG ATAGAGCAGA AACAGGCGAC TATAAAAAGC
AATACGCTGC CGGTGGTCAA AGGTATTCCT TTACAGCTTC AGCAGCTCTT TACCAACTTA
ATAGGTAACT CGCTCAAATT CTGTGAAAAT CAGCCACTTA TAAGTATTTT CGCATCACCA
CTACCGGCGC CGGAAATACC GTTTTATCCG GGCTTACAGG AGGATATTTC TTATGTAAAA
CTGGAGTTTT CTGATAACGG AATCGGTTTT GAACAGCAGT TTGCCGAAAG GATATTTGCC
ATCTTCCAGC GATTGAATGA ACGGAAGGTA TATGCCGGTA CGGGTATCGG GCTGGCACTC
TGTAAGAAGA TCGTAGAGAA TCATCATGGG ATCATCAGGG CGAATGGAAA GCTGAATGAA
GGCGCTACAT TTACAGTGAT ACTACCTGCT TAA
 
Protein sequence
MELTKTVTPE FLTGGGEMGE LIRSRDWSKT PLGPVEAWPQ SLKTCVRIML TSRQPMFVWW 
GGDLINLYND AYRSILGGKH PAVLGSPASE VWTEIWDQVG PRAEVCMQQN VGTYDESLLL
LMERNGYPEE TYYTFSYSPV PGDEGGTSGI ICANTDDTQR ILGERQLRTL KDLGRYLAEA
KDDADVYNRA VEILKENPAD FPFACFYELS IQTGTLNMTA KTDELLSTDI LPQELILEST
IADDWQFPYV ITHNRAARIE ELQAKYGQLP SGCWTISPDQ ALVIPVMQNG QDCPFALLIV
GINPHRQLDE KYTSFFQLVA DQIAGSIVNV HTVEEARKRA EALLEIDRAK TAFFSNISHE
FRTPLTLMLG PLEELLSQQD GVLTKQQEAN VTATHRNAMR LLRLVNTLLD FSRIEADKVR
AQYFPVNLSD VTTDIASTFR AAVEHAGLEF NVTCKDLSMA AYVDRDMWEK VILNLLSNAF
KYTLQGSISV ILEESDQHAI LLVRDTGVGI PVSELPNMFE RFHRVKQSKG RSFEGTGIGL
SLVRELVQLH NGDISVESEE GKGSTFAVKI PLGRAHLPEE QVVENAGAGT NQTPGLSAAY
VNEAMYFNRQ QDSNGIDIDR IEEGEERARV LIVDDNADMR DYLQRLLEKQ YYIETAANGK
LALEKIATHQ PELIISDVMM PEMDGIELLH HVKHNPATES LPVILVSARA GEEATIEGYD
IGADDYLTKP FSAKELQARV RAQIRVSRLH RHALDILQHS AEELEKKVEA RTSELLRKNS
ELEQFAYIAS HDLQEPLRKI RTFSELLQKS LQKGNPVNNY FDKIQSSAER MTQLIKDVLD
YSRLSNTEEK FVPIDLNTIL QQVKGDFDLL IEQKQATIKS NTLPVVKGIP LQLQQLFTNL
IGNSLKFCEN QPLISIFASP LPAPEIPFYP GLQEDISYVK LEFSDNGIGF EQQFAERIFA
IFQRLNERKV YAGTGIGLAL CKKIVENHHG IIRANGKLNE GATFTVILPA