More than 300 homologs were found in PanDaTox collection
for query gene Ndas_5315 on replicon NC_014211
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  100 
 
 
228 aa  447  1e-125  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  85.96 
 
 
228 aa  391  1e-108  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  77.19 
 
 
228 aa  354  5e-97  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  76.23 
 
 
226 aa  342  2.9999999999999997e-93  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  74.44 
 
 
226 aa  341  5.999999999999999e-93  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  67.71 
 
 
225 aa  309  2e-83  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  67.41 
 
 
224 aa  307  1.0000000000000001e-82  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  65.77 
 
 
225 aa  293  2e-78  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  65.32 
 
 
225 aa  292  3e-78  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  64.86 
 
 
225 aa  290  1e-77  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  65.93 
 
 
242 aa  288  4e-77  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013131  Caci_8903  transcriptional regulator, Crp/Fnr family  66.07 
 
 
224 aa  283  1.0000000000000001e-75  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  62.78 
 
 
226 aa  273  1.0000000000000001e-72  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  63.59 
 
 
220 aa  271  4.0000000000000004e-72  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  59.82 
 
 
225 aa  271  5.000000000000001e-72  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  60.71 
 
 
224 aa  271  6e-72  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  61.71 
 
 
225 aa  269  2e-71  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  62.84 
 
 
225 aa  266  1e-70  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  59.11 
 
 
226 aa  262  3e-69  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  62.95 
 
 
224 aa  261  8.999999999999999e-69  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  59.28 
 
 
225 aa  260  1e-68  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  60.81 
 
 
225 aa  251  8.000000000000001e-66  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  57.59 
 
 
224 aa  248  5e-65  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  58.48 
 
 
224 aa  246  2e-64  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  58.04 
 
 
224 aa  245  3e-64  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_013093  Amir_0253  transcriptional regulator, Crp/Fnr family  57.59 
 
 
224 aa  244  6e-64  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  55.8 
 
 
224 aa  243  1.9999999999999999e-63  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  55.36 
 
 
224 aa  242  3.9999999999999997e-63  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  55.36 
 
 
224 aa  242  3.9999999999999997e-63  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  55.36 
 
 
224 aa  242  3.9999999999999997e-63  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_009921  Franean1_0328  Crp/FNR family transcriptional regulator  62.01 
 
 
246 aa  241  7.999999999999999e-63  Frankia sp. EAN1pec  Bacteria  normal  0.0277272  normal  0.0570772 
 
 
-
 
NC_013159  Svir_36130  cAMP-binding protein  54.91 
 
 
224 aa  240  1e-62  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.758224 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  55.36 
 
 
224 aa  240  1e-62  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_007777  Francci3_4286  Crp/FNR family transcriptional regulator  60.09 
 
 
241 aa  236  2e-61  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  58.04 
 
 
225 aa  231  7.000000000000001e-60  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  58.04 
 
 
225 aa  231  1e-59  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009338  Mflv_4388  CRP/FNR family transcriptional regulator  51.34 
 
 
225 aa  214  7e-55  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  43.67 
 
 
236 aa  189  2.9999999999999997e-47  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_010816  BLD_0979  cAMP-binding protein  43.29 
 
 
239 aa  185  6e-46  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  34.53 
 
 
225 aa  151  8e-36  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5745  transcriptional regulator  36.41 
 
 
243 aa  149  3e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.810963  normal 
 
 
-
 
NC_009921  Franean1_1101  Crp/FNR family transcriptional regulator  40 
 
 
246 aa  144  1e-33  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3629  Crp/FNR family transcriptional regulator  38.22 
 
 
263 aa  138  7e-32  Frankia sp. CcI3  Bacteria  normal  normal  0.332638 
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  38.39 
 
 
220 aa  138  7.999999999999999e-32  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  32.26 
 
 
226 aa  137  2e-31  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.52 
 
 
219 aa  135  4e-31  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_009380  Strop_3269  CRP/FNR family transcriptional regulator  39.27 
 
 
230 aa  134  9e-31  Salinispora tropica CNB-440  Bacteria  normal  0.883713  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  33.03 
 
 
225 aa  134  9.999999999999999e-31  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  31.98 
 
 
227 aa  134  9.999999999999999e-31  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  38.74 
 
 
230 aa  132  3.9999999999999996e-30  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  32.13 
 
 
231 aa  132  6e-30  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  33.33 
 
 
226 aa  131  1.0000000000000001e-29  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  31.22 
 
 
236 aa  130  1.0000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  31.02 
 
 
226 aa  130  1.0000000000000001e-29  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  34 
 
 
223 aa  127  1.0000000000000001e-28  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  40 
 
 
225 aa  127  2.0000000000000002e-28  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_013947  Snas_5052  transcriptional regulator, Crp/Fnr family  34.68 
 
 
228 aa  125  4.0000000000000003e-28  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.267336 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  34.07 
 
 
251 aa  125  4.0000000000000003e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  38.03 
 
 
225 aa  124  1e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  36.41 
 
 
223 aa  124  2e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  33.33 
 
 
224 aa  123  2e-27  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_009767  Rcas_3427  Crp/FNR family transcriptional regulator  38.39 
 
 
223 aa  124  2e-27  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0598833  hitchhiker  0.00496827 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  35.94 
 
 
223 aa  123  2e-27  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_008148  Rxyl_2796  Crp/FNR family transcriptional regulator  34.23 
 
 
250 aa  122  4e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  31.82 
 
 
222 aa  120  1.9999999999999998e-26  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  27.31 
 
 
225 aa  119  3.9999999999999996e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  32.87 
 
 
229 aa  118  9e-26  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  31.7 
 
 
228 aa  117  9.999999999999999e-26  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  30.29 
 
 
232 aa  116  3e-25  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  28.04 
 
 
236 aa  115  3.9999999999999997e-25  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_011894  Mnod_3035  transcriptional regulator, Crp/Fnr family  33.78 
 
 
224 aa  115  3.9999999999999997e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.738115  n/a   
 
 
-
 
NC_009972  Haur_0049  Crp/FNR family transcriptional regulator  33.63 
 
 
252 aa  115  6e-25  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.422683  n/a   
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  29.9 
 
 
228 aa  115  6e-25  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  28.04 
 
 
236 aa  115  6e-25  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  28.04 
 
 
236 aa  114  7.999999999999999e-25  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  29.95 
 
 
223 aa  114  1.0000000000000001e-24  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  27.57 
 
 
236 aa  114  1.0000000000000001e-24  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  31.19 
 
 
225 aa  113  2.0000000000000002e-24  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  32.42 
 
 
234 aa  113  2.0000000000000002e-24  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  30.67 
 
 
225 aa  113  2.0000000000000002e-24  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.67 
 
 
239 aa  114  2.0000000000000002e-24  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  30.73 
 
 
247 aa  112  3e-24  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  30.24 
 
 
224 aa  113  3e-24  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  32.44 
 
 
226 aa  113  3e-24  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  30 
 
 
222 aa  113  3e-24  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  37.86 
 
 
243 aa  112  4.0000000000000004e-24  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  37.86 
 
 
243 aa  112  4.0000000000000004e-24  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  36.14 
 
 
214 aa  112  5e-24  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  31.02 
 
 
229 aa  112  5e-24  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1232  transcriptional regulator, Crp/Fnr family  34.55 
 
 
235 aa  112  5e-24  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  36.22 
 
 
222 aa  111  7.000000000000001e-24  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  29.41 
 
 
230 aa  111  8.000000000000001e-24  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  32.72 
 
 
249 aa  111  9e-24  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_013510  Tcur_1118  transcriptional regulator, Crp/Fnr family  33.65 
 
 
240 aa  111  1.0000000000000001e-23  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  31.36 
 
 
231 aa  111  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.27 
 
 
232 aa  111  1.0000000000000001e-23  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.96 
 
 
241 aa  110  2.0000000000000002e-23  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  32.44 
 
 
226 aa  110  2.0000000000000002e-23  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  33.33 
 
 
228 aa  109  3e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  33.18 
 
 
222 aa  109  3e-23  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
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