More than 300 homologs were found in PanDaTox collection
for query gene Cthe_2775 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  100 
 
 
232 aa  464  9.999999999999999e-131  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  44.54 
 
 
239 aa  219  3e-56  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  42.11 
 
 
236 aa  197  7.999999999999999e-50  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  42.11 
 
 
236 aa  197  1.0000000000000001e-49  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  43.67 
 
 
236 aa  195  4.0000000000000005e-49  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  43.23 
 
 
236 aa  194  8.000000000000001e-49  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  39.47 
 
 
236 aa  172  5e-42  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  39.04 
 
 
236 aa  171  7.999999999999999e-42  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  30.88 
 
 
221 aa  131  6.999999999999999e-30  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  36.28 
 
 
225 aa  131  9e-30  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  32.56 
 
 
225 aa  131  1.0000000000000001e-29  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.73 
 
 
219 aa  129  3e-29  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  26.87 
 
 
235 aa  129  4.0000000000000003e-29  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  34.6 
 
 
233 aa  125  4.0000000000000003e-28  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  31.34 
 
 
225 aa  126  4.0000000000000003e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  31.13 
 
 
234 aa  125  6e-28  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  34.45 
 
 
226 aa  125  8.000000000000001e-28  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  33.18 
 
 
230 aa  123  3e-27  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  33.49 
 
 
238 aa  123  3e-27  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  29.19 
 
 
225 aa  123  3e-27  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  31.75 
 
 
226 aa  122  4e-27  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  29.72 
 
 
231 aa  121  9.999999999999999e-27  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.19 
 
 
225 aa  121  9.999999999999999e-27  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  31.88 
 
 
238 aa  120  1.9999999999999998e-26  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  33.01 
 
 
238 aa  119  4.9999999999999996e-26  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  34.3 
 
 
227 aa  117  9.999999999999999e-26  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  32.7 
 
 
234 aa  117  9.999999999999999e-26  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  31.28 
 
 
222 aa  116  1.9999999999999998e-25  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  29.19 
 
 
229 aa  117  1.9999999999999998e-25  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  28.57 
 
 
221 aa  115  5e-25  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.44 
 
 
228 aa  115  5e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013174  Jden_0916  transcriptional regulator, Crp/Fnr family  27.98 
 
 
242 aa  115  6e-25  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  30.33 
 
 
224 aa  115  6e-25  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  29.05 
 
 
238 aa  115  7.999999999999999e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  31.37 
 
 
231 aa  114  1.0000000000000001e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  30 
 
 
225 aa  113  2.0000000000000002e-24  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  26.39 
 
 
248 aa  111  1.0000000000000001e-23  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  27.27 
 
 
228 aa  111  1.0000000000000001e-23  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  30.23 
 
 
227 aa  110  2.0000000000000002e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  28.64 
 
 
235 aa  110  2.0000000000000002e-23  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  27.49 
 
 
261 aa  110  2.0000000000000002e-23  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.64 
 
 
228 aa  109  3e-23  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  28.95 
 
 
211 aa  110  3e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  28.23 
 
 
226 aa  108  5e-23  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  27.06 
 
 
249 aa  108  5e-23  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  30.67 
 
 
231 aa  108  6e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  26.64 
 
 
226 aa  108  8.000000000000001e-23  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  24.65 
 
 
242 aa  107  2e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  24.26 
 
 
248 aa  106  2e-22  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0719  transcriptional regulator, Crp/Fnr family  27.36 
 
 
257 aa  107  2e-22  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000204419 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  29.61 
 
 
223 aa  106  3e-22  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  23.81 
 
 
248 aa  106  3e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  30.77 
 
 
254 aa  106  3e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  24.68 
 
 
248 aa  106  4e-22  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  24.68 
 
 
248 aa  106  4e-22  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  27.57 
 
 
231 aa  106  4e-22  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  28.44 
 
 
261 aa  105  4e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  31 
 
 
226 aa  105  5e-22  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  25.82 
 
 
224 aa  105  5e-22  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  28.44 
 
 
222 aa  105  8e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  28.91 
 
 
224 aa  104  9e-22  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  25.73 
 
 
225 aa  105  9e-22  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  26.87 
 
 
226 aa  105  9e-22  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  25.58 
 
 
225 aa  104  9e-22  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  25.7 
 
 
226 aa  103  2e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  27.75 
 
 
225 aa  103  2e-21  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  25.48 
 
 
228 aa  103  2e-21  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  29.3 
 
 
229 aa  104  2e-21  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  29.67 
 
 
222 aa  102  3e-21  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  25 
 
 
225 aa  103  3e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  27.8 
 
 
229 aa  103  3e-21  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  28.5 
 
 
222 aa  102  4e-21  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  26.79 
 
 
227 aa  101  8e-21  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  32.06 
 
 
250 aa  101  1e-20  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  25.12 
 
 
247 aa  100  2e-20  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  27.88 
 
 
238 aa  100  2e-20  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  25.37 
 
 
227 aa  100  2e-20  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  24.19 
 
 
225 aa  100  2e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  30.77 
 
 
248 aa  99.8  3e-20  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  26.61 
 
 
227 aa  100  3e-20  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  25.35 
 
 
226 aa  99.8  3e-20  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  25.32 
 
 
237 aa  99.8  3e-20  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  24.41 
 
 
240 aa  99.4  4e-20  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  30.77 
 
 
248 aa  99.4  4e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  27.45 
 
 
243 aa  99.8  4e-20  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  27.85 
 
 
231 aa  99.8  4e-20  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  29.86 
 
 
236 aa  99  5e-20  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  25 
 
 
225 aa  99.4  5e-20  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  30.77 
 
 
249 aa  98.6  7e-20  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_0984  Crp-like transcriptional regulator  26.48 
 
 
209 aa  98.6  7e-20  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  30.77 
 
 
249 aa  98.6  7e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  30.4 
 
 
249 aa  98.2  9e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  24.41 
 
 
220 aa  97.8  1e-19  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_012560  Avin_22000  transcriptional regulator, Crp/Fnr family  25.13 
 
 
235 aa  97.8  1e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.457493  n/a   
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  26.58 
 
 
237 aa  97.8  1e-19  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  32.51 
 
 
250 aa  97.8  1e-19  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  26.09 
 
 
233 aa  97.8  1e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  31.03 
 
 
254 aa  97.4  2e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  22.33 
 
 
231 aa  97.1  2e-19  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  31.53 
 
 
250 aa  97.1  2e-19  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
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