More than 300 homologs were found in PanDaTox collection
for query gene Ccel_1678 on replicon NC_011898
Organism: Clostridium cellulolyticum H10



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  100 
 
 
234 aa  481  1e-135  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  48.02 
 
 
230 aa  227  1e-58  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  45.41 
 
 
221 aa  184  1.0000000000000001e-45  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  33.02 
 
 
225 aa  154  1e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  36.24 
 
 
235 aa  149  3e-35  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  33.94 
 
 
236 aa  139  3.9999999999999997e-32  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  33.94 
 
 
236 aa  139  3.9999999999999997e-32  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008530  LGAS_0984  Crp-like transcriptional regulator  35.85 
 
 
209 aa  137  1e-31  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  35.14 
 
 
229 aa  132  3.9999999999999996e-30  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  31.22 
 
 
232 aa  130  2.0000000000000002e-29  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  32.02 
 
 
239 aa  127  1.0000000000000001e-28  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013174  Jden_0916  transcriptional regulator, Crp/Fnr family  32.88 
 
 
242 aa  124  1e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  28.95 
 
 
235 aa  124  1e-27  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  32.42 
 
 
236 aa  123  3e-27  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  35.98 
 
 
224 aa  122  4e-27  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  31.96 
 
 
236 aa  122  6e-27  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  30.09 
 
 
226 aa  118  7.999999999999999e-26  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  28.97 
 
 
223 aa  118  7.999999999999999e-26  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  30.84 
 
 
228 aa  117  1.9999999999999998e-25  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009513  Lreu_1425  CRP/FNR family transcriptional regulator  31.44 
 
 
212 aa  116  3.9999999999999997e-25  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  113  2.0000000000000002e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.05 
 
 
219 aa  114  2.0000000000000002e-24  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  27.75 
 
 
261 aa  110  1.0000000000000001e-23  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  30.67 
 
 
249 aa  109  4.0000000000000004e-23  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  30.84 
 
 
232 aa  109  5e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  29.67 
 
 
227 aa  108  9.000000000000001e-23  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  30.58 
 
 
236 aa  107  1e-22  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  30.35 
 
 
261 aa  107  1e-22  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  31.31 
 
 
242 aa  107  2e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  30.67 
 
 
250 aa  106  3e-22  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  32.39 
 
 
225 aa  106  4e-22  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  31.9 
 
 
239 aa  105  5e-22  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  28.5 
 
 
249 aa  105  5e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
250 aa  105  5e-22  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  28.64 
 
 
236 aa  105  6e-22  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  31.53 
 
 
249 aa  105  8e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  24.43 
 
 
231 aa  105  8e-22  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30.32 
 
 
254 aa  105  9e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  29.07 
 
 
250 aa  104  1e-21  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  28.18 
 
 
236 aa  104  1e-21  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  32.51 
 
 
257 aa  104  1e-21  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  29.86 
 
 
250 aa  104  1e-21  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  32.11 
 
 
248 aa  103  2e-21  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  31.82 
 
 
248 aa  103  2e-21  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  31.03 
 
 
248 aa  103  2e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  31.03 
 
 
248 aa  103  2e-21  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  31.53 
 
 
232 aa  103  2e-21  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.23 
 
 
226 aa  103  2e-21  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.73 
 
 
224 aa  103  2e-21  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  31.03 
 
 
249 aa  103  3e-21  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  28.77 
 
 
267 aa  103  3e-21  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1887  FNR/CRP family transcriptional regulator  32.56 
 
 
216 aa  102  4e-21  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.000000000000504679 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  28.18 
 
 
254 aa  102  5e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  29.57 
 
 
242 aa  102  6e-21  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  31.05 
 
 
250 aa  102  6e-21  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  30 
 
 
231 aa  102  7e-21  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  26.76 
 
 
225 aa  101  8e-21  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.1 
 
 
225 aa  101  9e-21  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  28.44 
 
 
249 aa  100  1e-20  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  30.54 
 
 
251 aa  100  1e-20  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  30.54 
 
 
251 aa  100  1e-20  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  28.89 
 
 
249 aa  101  1e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  30.54 
 
 
251 aa  100  1e-20  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  30.54 
 
 
251 aa  100  1e-20  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  28.96 
 
 
252 aa  101  1e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.23 
 
 
226 aa  100  2e-20  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  30.84 
 
 
242 aa  100  2e-20  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  28.44 
 
 
222 aa  100  2e-20  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  30.54 
 
 
248 aa  100  2e-20  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  30.54 
 
 
248 aa  100  2e-20  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  29.65 
 
 
244 aa  99.8  3e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  30.05 
 
 
251 aa  99.8  3e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  30.05 
 
 
251 aa  99.8  3e-20  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.24 
 
 
229 aa  99.8  3e-20  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  30.3 
 
 
243 aa  100  3e-20  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  30.59 
 
 
248 aa  99.8  4e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  30.05 
 
 
251 aa  99.8  4e-20  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  29.56 
 
 
248 aa  99.4  4e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.62 
 
 
225 aa  99.4  4e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  28.57 
 
 
244 aa  99  5e-20  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  28.57 
 
 
244 aa  99  6e-20  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  28.57 
 
 
244 aa  99  6e-20  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  28.71 
 
 
231 aa  99  6e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.64 
 
 
225 aa  99  6e-20  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  28.16 
 
 
248 aa  99  6e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  31.8 
 
 
250 aa  98.6  7e-20  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  28.7 
 
 
244 aa  98.6  7e-20  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  23.9 
 
 
222 aa  98.2  8e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  30.14 
 
 
248 aa  98.6  8e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  30.54 
 
 
250 aa  98.2  9e-20  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  30.54 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  30.54 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  30.54 
 
 
250 aa  97.8  1e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  30.05 
 
 
234 aa  97.4  1e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
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