More than 300 homologs were found in PanDaTox collection
for query gene Lreu_1425 on replicon NC_009513
Organism: Lactobacillus reuteri DSM 20016



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009513  Lreu_1425  CRP/FNR family transcriptional regulator  100 
 
 
212 aa  432  1e-120  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0984  Crp-like transcriptional regulator  45.89 
 
 
209 aa  207  1e-52  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  34.63 
 
 
229 aa  147  1.0000000000000001e-34  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  34.69 
 
 
221 aa  125  3e-28  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  32.7 
 
 
230 aa  122  4e-27  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  31.44 
 
 
234 aa  116  3e-25  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1007  CRP/FNR family transcriptional regulator  33.77 
 
 
164 aa  105  3e-22  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1887  FNR/CRP family transcriptional regulator  31.07 
 
 
216 aa  97.1  2e-19  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.000000000000504679 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  29.35 
 
 
232 aa  95.1  7e-19  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.25 
 
 
236 aa  94  2e-18  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  30.89 
 
 
224 aa  93.2  3e-18  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  31.41 
 
 
235 aa  91.3  1e-17  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.12 
 
 
236 aa  90.1  2e-17  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  24.29 
 
 
236 aa  88.2  8e-17  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  24.29 
 
 
236 aa  87.8  1e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  27.55 
 
 
225 aa  82.4  0.000000000000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  27.86 
 
 
223 aa  79.3  0.00000000000004  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  23.83 
 
 
224 aa  79  0.00000000000006  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  22.73 
 
 
239 aa  77.8  0.0000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  26.18 
 
 
222 aa  77  0.0000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  27.6 
 
 
224 aa  77  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  25.46 
 
 
228 aa  77.4  0.0000000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_013174  Jden_0916  transcriptional regulator, Crp/Fnr family  27.78 
 
 
242 aa  75.9  0.0000000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.57 
 
 
226 aa  75.5  0.0000000000005  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  31.68 
 
 
231 aa  75.5  0.0000000000006  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  26.42 
 
 
222 aa  74.7  0.0000000000008  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  21.83 
 
 
219 aa  74.7  0.0000000000009  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007404  Tbd_2593  Crp/FNR family transcriptional regulator  26.21 
 
 
254 aa  73.2  0.000000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.431237  normal  0.296758 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  26.92 
 
 
227 aa  72.4  0.000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  25.76 
 
 
225 aa  70.9  0.00000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  23.47 
 
 
226 aa  70.9  0.00000000001  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  26.42 
 
 
235 aa  70.5  0.00000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  25.59 
 
 
248 aa  70.1  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  24.74 
 
 
233 aa  70.1  0.00000000002  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.57 
 
 
236 aa  69.3  0.00000000004  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  24.23 
 
 
238 aa  68.6  0.00000000006  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  27.69 
 
 
229 aa  68.6  0.00000000007  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  24.19 
 
 
231 aa  67.4  0.0000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007519  Dde_0463  Crp/FNR family transcriptional regulator  26.7 
 
 
221 aa  66.6  0.0000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.607183  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  23.71 
 
 
226 aa  66.6  0.0000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  26.56 
 
 
225 aa  66.2  0.0000000004  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  25.64 
 
 
239 aa  66.2  0.0000000004  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  26.21 
 
 
221 aa  65.5  0.0000000005  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  26.04 
 
 
227 aa  64.7  0.000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  27.71 
 
 
228 aa  63.5  0.000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  25.47 
 
 
234 aa  63.2  0.000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  26.88 
 
 
237 aa  62.4  0.000000005  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007498  Pcar_2562  cyclic AMP receptor protein  25.79 
 
 
222 aa  62.4  0.000000005  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.553837  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  25.75 
 
 
231 aa  62  0.000000006  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009483  Gura_0851  CRP/FNR family transcriptional regulator  21.24 
 
 
229 aa  62  0.000000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0183246  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  22.4 
 
 
225 aa  61.6  0.000000007  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  23.65 
 
 
355 aa  61.6  0.000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  27.45 
 
 
248 aa  61.6  0.000000008  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  27.45 
 
 
248 aa  61.6  0.000000008  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  24.88 
 
 
238 aa  61.6  0.000000008  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  25.73 
 
 
238 aa  61.6  0.000000008  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  27.12 
 
 
211 aa  61.6  0.000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  24.31 
 
 
238 aa  61.6  0.000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  21.05 
 
 
229 aa  61.6  0.000000009  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  24.31 
 
 
238 aa  61.6  0.000000009  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  24.02 
 
 
239 aa  61.6  0.000000009  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0079  Crp/FNR family transcriptional regulator  26.35 
 
 
225 aa  61.2  0.00000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.849443  normal  0.162256 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  23.81 
 
 
239 aa  61.2  0.00000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  27.45 
 
 
248 aa  61.2  0.00000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  30 
 
 
222 aa  61.2  0.00000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  27.45 
 
 
249 aa  61.2  0.00000001  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  27.45 
 
 
249 aa  61.2  0.00000001  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  27.45 
 
 
248 aa  61.2  0.00000001  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_013061  Phep_1849  cyclic nucleotide-binding  25.28 
 
 
195 aa  60.5  0.00000002  Pedobacter heparinus DSM 2366  Bacteria  hitchhiker  0.00134256  normal  0.103049 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  29.94 
 
 
230 aa  60.1  0.00000002  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  25.74 
 
 
251 aa  60.1  0.00000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  24.02 
 
 
239 aa  60.5  0.00000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  25.37 
 
 
239 aa  60.5  0.00000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  22.58 
 
 
223 aa  60.1  0.00000002  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  21.05 
 
 
227 aa  59.3  0.00000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  21.05 
 
 
227 aa  59.3  0.00000004  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  26.96 
 
 
248 aa  59.7  0.00000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3081  CRP/FNR family transcriptional regulator  25.54 
 
 
249 aa  59.7  0.00000004  Marinobacter aquaeolei VT8  Bacteria  normal  0.0390484  n/a   
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  21.05 
 
 
229 aa  59.3  0.00000004  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  20.73 
 
 
241 aa  58.9  0.00000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  24.76 
 
 
227 aa  59.3  0.00000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  21.99 
 
 
226 aa  58.2  0.00000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  21.7 
 
 
231 aa  58.2  0.00000008  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  25.74 
 
 
251 aa  58.2  0.00000009  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  25.74 
 
 
251 aa  58.2  0.00000009  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  25.74 
 
 
251 aa  58.2  0.00000009  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  25.74 
 
 
251 aa  58.2  0.00000009  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  23.28 
 
 
225 aa  57.8  0.0000001  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  20.98 
 
 
222 aa  57.8  0.0000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  25.15 
 
 
214 aa  57.8  0.0000001  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  21.24 
 
 
230 aa  57.8  0.0000001  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  24.38 
 
 
238 aa  57.8  0.0000001  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3735  transcriptional regulator, Crp/Fnr family  26.51 
 
 
210 aa  57.8  0.0000001  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  25.25 
 
 
251 aa  57  0.0000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  27.78 
 
 
236 aa  57.4  0.0000002  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  28.57 
 
 
224 aa  57  0.0000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  25.25 
 
 
251 aa  57  0.0000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  25.12 
 
 
254 aa  56.6  0.0000003  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  25 
 
 
230 aa  56.2  0.0000003  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  28.39 
 
 
230 aa  56.6  0.0000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
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