More than 300 homologs were found in PanDaTox collection
for query gene BBta_p0192 on replicon NC_009475
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009475  BBta_p0192  CRP family transcriptional regulator  100 
 
 
230 aa  469  1.0000000000000001e-131  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  43 
 
 
231 aa  173  2.9999999999999996e-42  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  44.66 
 
 
229 aa  172  5e-42  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  46.77 
 
 
230 aa  169  3e-41  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  46.03 
 
 
231 aa  167  1e-40  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  46.77 
 
 
229 aa  166  2.9999999999999998e-40  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  42.42 
 
 
230 aa  166  4e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  46.24 
 
 
229 aa  164  1.0000000000000001e-39  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  47.28 
 
 
227 aa  162  3e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  46.45 
 
 
229 aa  162  6e-39  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  41.2 
 
 
229 aa  160  1e-38  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  44.57 
 
 
229 aa  160  2e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  44.61 
 
 
236 aa  158  6e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  44.97 
 
 
227 aa  158  8e-38  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  46.15 
 
 
268 aa  153  2e-36  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  44.86 
 
 
227 aa  152  4e-36  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  43.94 
 
 
222 aa  151  5.9999999999999996e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  43.09 
 
 
230 aa  145  5e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  41.92 
 
 
229 aa  142  4e-33  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  38.14 
 
 
220 aa  142  6e-33  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  42.25 
 
 
215 aa  141  7e-33  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  41.85 
 
 
226 aa  137  1e-31  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  41.18 
 
 
228 aa  136  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  37.06 
 
 
204 aa  131  1.0000000000000001e-29  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  38.25 
 
 
220 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  34.91 
 
 
211 aa  125  6e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  38.71 
 
 
224 aa  123  2e-27  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  38.5 
 
 
246 aa  122  5e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  36.22 
 
 
234 aa  119  4.9999999999999996e-26  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  34.85 
 
 
239 aa  118  7e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  34.13 
 
 
239 aa  118  7e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  37.57 
 
 
239 aa  117  1.9999999999999998e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  34.72 
 
 
242 aa  112  3e-24  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  38.42 
 
 
245 aa  113  3e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  35.91 
 
 
239 aa  111  9e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  33.05 
 
 
242 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  33.05 
 
 
242 aa  110  2.0000000000000002e-23  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  36.93 
 
 
211 aa  110  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  39.74 
 
 
253 aa  110  2.0000000000000002e-23  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  34.72 
 
 
262 aa  109  4.0000000000000004e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  33.33 
 
 
242 aa  107  2e-22  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  34.01 
 
 
208 aa  106  2e-22  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  32.63 
 
 
232 aa  107  2e-22  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  33.9 
 
 
237 aa  104  1e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  35.96 
 
 
238 aa  104  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  35.96 
 
 
238 aa  104  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  31.78 
 
 
232 aa  102  4e-21  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  32.77 
 
 
249 aa  102  4e-21  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  34.21 
 
 
250 aa  102  5e-21  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  32.24 
 
 
250 aa  100  2e-20  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  31.78 
 
 
254 aa  100  2e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  32.24 
 
 
250 aa  100  2e-20  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  32.24 
 
 
250 aa  100  2e-20  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  30.61 
 
 
252 aa  100  2e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  32.72 
 
 
249 aa  99.8  4e-20  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  37.3 
 
 
254 aa  99.4  4e-20  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  30.89 
 
 
243 aa  99.4  4e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  31.91 
 
 
249 aa  98.6  6e-20  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  38.04 
 
 
250 aa  98.6  7e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  32.63 
 
 
250 aa  98.2  9e-20  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  98.2  9e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  98.2  9e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  98.2  9e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  98.2  9e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  32.63 
 
 
248 aa  98.2  9e-20  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  98.2  9e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  31.78 
 
 
250 aa  97.8  1e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  33.16 
 
 
248 aa  97.8  1e-19  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  97.1  2e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  97.1  2e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  97.1  2e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  97.1  2e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  32.57 
 
 
250 aa  97.4  2e-19  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  97.1  2e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  32.11 
 
 
250 aa  96.7  3e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  34.1 
 
 
257 aa  96.7  3e-19  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  33.16 
 
 
250 aa  95.9  4e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  33.16 
 
 
250 aa  95.9  4e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  33.16 
 
 
250 aa  95.9  4e-19  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  29.91 
 
 
256 aa  95.9  4e-19  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  37.58 
 
 
250 aa  95.9  5e-19  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  32.62 
 
 
250 aa  95.5  6e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
250 aa  95.5  6e-19  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  33.66 
 
 
310 aa  95.5  6e-19  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  33.33 
 
 
247 aa  95.5  7e-19  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  31.31 
 
 
250 aa  95.5  7e-19  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  31.31 
 
 
250 aa  95.5  7e-19  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  31.31 
 
 
250 aa  95.5  7e-19  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  31.31 
 
 
250 aa  95.5  7e-19  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  31.31 
 
 
250 aa  95.5  7e-19  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  31 
 
 
254 aa  95.1  8e-19  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  33.72 
 
 
239 aa  95.1  9e-19  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
248 aa  94.4  1e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  32.63 
 
 
248 aa  94  2e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  35 
 
 
235 aa  94.4  2e-18  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  37.58 
 
 
250 aa  94  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  30.83 
 
 
256 aa  94  2e-18  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  33.16 
 
 
250 aa  93.2  3e-18  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  38.89 
 
 
230 aa  93.2  3e-18  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  30.17 
 
 
245 aa  92.8  4e-18  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
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