More than 300 homologs were found in PanDaTox collection
for query gene Nham_1951 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_1951  transcriptional regulator FixK  100 
 
 
231 aa  475  1e-133  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  83.98 
 
 
231 aa  403  1e-111  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  72.93 
 
 
229 aa  337  8e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  71 
 
 
229 aa  332  2e-90  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  72.51 
 
 
230 aa  323  2e-87  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  73.46 
 
 
229 aa  322  2e-87  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  69.7 
 
 
229 aa  322  3e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  67.44 
 
 
268 aa  287  9e-77  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  62.94 
 
 
227 aa  256  3e-67  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  54.41 
 
 
230 aa  233  1.0000000000000001e-60  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  56.61 
 
 
227 aa  215  5e-55  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  52.83 
 
 
230 aa  213  9.999999999999999e-55  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  52.85 
 
 
229 aa  213  2.9999999999999995e-54  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  52.85 
 
 
229 aa  213  2.9999999999999995e-54  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  54.84 
 
 
228 aa  206  3e-52  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  53.54 
 
 
227 aa  203  1e-51  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  43.56 
 
 
215 aa  195  4.0000000000000005e-49  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  47.55 
 
 
220 aa  190  2e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  49.22 
 
 
229 aa  184  1.0000000000000001e-45  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  41.78 
 
 
222 aa  179  2.9999999999999997e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  44.66 
 
 
220 aa  177  2e-43  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  48.4 
 
 
236 aa  172  3.9999999999999995e-42  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  43 
 
 
230 aa  169  2e-41  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  48.31 
 
 
226 aa  165  5e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  44.33 
 
 
208 aa  164  2.0000000000000002e-39  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  42.05 
 
 
211 aa  159  3e-38  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  39.9 
 
 
204 aa  158  6e-38  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  45.2 
 
 
234 aa  157  9e-38  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  45.2 
 
 
224 aa  150  1e-35  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  40.1 
 
 
242 aa  139  4.999999999999999e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  38.86 
 
 
262 aa  137  1e-31  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  41.03 
 
 
246 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  42.05 
 
 
253 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  41.67 
 
 
211 aa  130  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  39.33 
 
 
239 aa  128  8.000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  39.52 
 
 
237 aa  126  3e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  38.2 
 
 
239 aa  125  6e-28  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  37.64 
 
 
239 aa  124  1e-27  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  40.76 
 
 
238 aa  123  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  40.76 
 
 
238 aa  123  2e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  40.66 
 
 
242 aa  122  6e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  37.36 
 
 
245 aa  120  1.9999999999999998e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  38.55 
 
 
239 aa  119  3e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  34.5 
 
 
263 aa  118  9.999999999999999e-26  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  34.39 
 
 
248 aa  116  3e-25  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  33.86 
 
 
249 aa  115  6e-25  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  34.39 
 
 
251 aa  114  8.999999999999998e-25  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  33.33 
 
 
243 aa  114  1.0000000000000001e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  35.71 
 
 
241 aa  114  2.0000000000000002e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  35.03 
 
 
310 aa  114  2.0000000000000002e-24  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  32.8 
 
 
232 aa  113  2.0000000000000002e-24  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  40.76 
 
 
250 aa  112  4.0000000000000004e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30.43 
 
 
254 aa  112  5e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  29.2 
 
 
250 aa  112  5e-24  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  30.92 
 
 
250 aa  112  5e-24  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  30.92 
 
 
250 aa  112  5e-24  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  38.2 
 
 
250 aa  112  6e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  112  7.000000000000001e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  40.13 
 
 
250 aa  111  8.000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  32.56 
 
 
244 aa  111  8.000000000000001e-24  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  30.09 
 
 
254 aa  111  8.000000000000001e-24  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  29.65 
 
 
250 aa  111  9e-24  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  111  9e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  35.6 
 
 
247 aa  111  1.0000000000000001e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  39.2 
 
 
235 aa  111  1.0000000000000001e-23  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  30.43 
 
 
250 aa  110  1.0000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  29.2 
 
 
250 aa  110  2.0000000000000002e-23  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  29.2 
 
 
250 aa  110  2.0000000000000002e-23  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
248 aa  110  2.0000000000000002e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  34.67 
 
 
261 aa  110  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  34.67 
 
 
261 aa  110  2.0000000000000002e-23  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
248 aa  110  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  30.92 
 
 
250 aa  110  2.0000000000000002e-23  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  29.79 
 
 
257 aa  110  2.0000000000000002e-23  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  30.43 
 
 
250 aa  110  3e-23  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  31.4 
 
 
244 aa  110  3e-23  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  31.4 
 
 
244 aa  110  3e-23  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  34.81 
 
 
254 aa  109  3e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  29.47 
 
 
239 aa  108  5e-23  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  28.76 
 
 
249 aa  108  5e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  32.51 
 
 
244 aa  108  6e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  28.76 
 
 
250 aa  108  7.000000000000001e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  28.76 
 
 
250 aa  108  7.000000000000001e-23  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  28.76 
 
 
250 aa  108  7.000000000000001e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  32.52 
 
 
242 aa  108  8.000000000000001e-23  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  30.43 
 
 
248 aa  108  8.000000000000001e-23  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  29.85 
 
 
250 aa  107  1e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  31.48 
 
 
244 aa  108  1e-22  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  36.09 
 
 
274 aa  107  1e-22  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  39.49 
 
 
254 aa  108  1e-22  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  30.85 
 
 
250 aa  107  1e-22  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
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