Gene RPD_3266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3266 
Symbol 
ID4023775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3622301 
End bp3622963 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content61% 
IMG OID637963469 
Productcyclic nucleotide-binding 
Protein accessionYP_570391 
Protein GI91977732 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00116153 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCTCTTGC AAACTGACGA TGATTGCGCG TGTCACGAGA CGCAAATCGG TCTGCTTTCG 
CGCGCGGCGG GGGTTCGGTC GAACCAGCGC TGCTACAGCA AGGGCGAACG AATCTACGCA
AGGGACGAGC CTGCGCATCA CGTTTACGCG GTCGTTCAAG GCGCAGTTCG AGCGACCCAC
TATCTCTCCG ATGGGCGCCG GCATTTGAGC GCGTTTCATC TGCCGGGCGA AATCTTCGGT
CTGTACACCC GCGAGGTCCG CAGTCTGGAG GCCGAAGCGG TCGTCAAGAC GACCACGCTG
GCGGTGCGGC GCGATGATCT CGAACGCGCA GCCAGCAGCG ATCCGAAACT CGCCTGGAGG
CTTTGCAACA TCGTGGCGGA CGATTTGCGA AGCGCGCAAG ACCACCTGAT GCTGTTGGGC
AGGAAGTCTG CGTCGGAGCG GGTCGCCGCG TTTCTGCTCG AGATGGATCG CCGCCTTGCG
ACTGACGGCA TCATGAGCCT CCCGATGTGC GGAATGGATA TCGCCGATTA CCTGGGCCTC
AGCAACGAGA CGGTCTCGCG TTGCCTGACG AAACTGCAGG AGTTGCGCAT CATCGACCTG
ACCAAAGGTC GAACGGTCAC ATTTCTTGAT CGCGCCGGTC TGCGCGAGAT CGACACCTCC
TGA
 
Protein sequence
MLLQTDDDCA CHETQIGLLS RAAGVRSNQR CYSKGERIYA RDEPAHHVYA VVQGAVRATH 
YLSDGRRHLS AFHLPGEIFG LYTREVRSLE AEAVVKTTTL AVRRDDLERA ASSDPKLAWR
LCNIVADDLR SAQDHLMLLG RKSASERVAA FLLEMDRRLA TDGIMSLPMC GMDIADYLGL
SNETVSRCLT KLQELRIIDL TKGRTVTFLD RAGLREIDTS