More than 300 homologs were found in PanDaTox collection
for query gene Mpop_3889 on replicon NC_010725
Organism: Methylobacterium populi BJ001



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  100 
 
 
229 aa  459  9.999999999999999e-129  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  84.21 
 
 
229 aa  385  1e-106  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  84.21 
 
 
229 aa  383  1e-105  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  75.26 
 
 
230 aa  272  4.0000000000000004e-72  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  67.53 
 
 
230 aa  271  9e-72  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  62.44 
 
 
227 aa  249  2e-65  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  63.18 
 
 
227 aa  241  5e-63  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  52.31 
 
 
228 aa  213  1.9999999999999998e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  49.22 
 
 
231 aa  206  3e-52  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  54.4 
 
 
229 aa  205  4e-52  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  51.53 
 
 
231 aa  204  7e-52  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  54.45 
 
 
229 aa  202  4e-51  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  53.37 
 
 
230 aa  202  5e-51  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  52.85 
 
 
229 aa  202  5e-51  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  52.72 
 
 
229 aa  197  1.0000000000000001e-49  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  54.76 
 
 
268 aa  191  7e-48  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  49.72 
 
 
227 aa  174  9e-43  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  44.57 
 
 
215 aa  162  6e-39  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  44.9 
 
 
220 aa  156  2e-37  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  46.6 
 
 
236 aa  155  6e-37  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  43.55 
 
 
222 aa  152  2.9999999999999998e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  48.02 
 
 
234 aa  149  5e-35  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  44.39 
 
 
220 aa  147  1.0000000000000001e-34  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  43.17 
 
 
204 aa  146  3e-34  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  41.92 
 
 
230 aa  144  1e-33  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  45.2 
 
 
224 aa  140  9.999999999999999e-33  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  42.02 
 
 
211 aa  139  3e-32  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  43.09 
 
 
226 aa  138  7e-32  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  41.03 
 
 
242 aa  135  4e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  44.64 
 
 
239 aa  130  1.0000000000000001e-29  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  45.24 
 
 
239 aa  129  4.0000000000000003e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  39.58 
 
 
262 aa  128  7.000000000000001e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  41.86 
 
 
237 aa  128  9.000000000000001e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  44.64 
 
 
239 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  41.67 
 
 
208 aa  126  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  44.05 
 
 
239 aa  125  5e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  42.77 
 
 
245 aa  125  6e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  40.11 
 
 
250 aa  124  8.000000000000001e-28  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  41.53 
 
 
253 aa  124  9e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  40.11 
 
 
250 aa  123  3e-27  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  35.91 
 
 
243 aa  121  8e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  41.92 
 
 
254 aa  120  3e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  41.62 
 
 
211 aa  117  9.999999999999999e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  39.08 
 
 
246 aa  116  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  40.8 
 
 
310 aa  115  3.9999999999999997e-25  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  39.64 
 
 
274 aa  115  7.999999999999999e-25  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  40.12 
 
 
238 aa  115  7.999999999999999e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  40.12 
 
 
238 aa  115  7.999999999999999e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  39.2 
 
 
242 aa  114  1.0000000000000001e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  36.02 
 
 
241 aa  112  4.0000000000000004e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  34.62 
 
 
250 aa  111  1.0000000000000001e-23  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  35.5 
 
 
250 aa  110  2.0000000000000002e-23  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  37.56 
 
 
248 aa  110  2.0000000000000002e-23  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  36.09 
 
 
248 aa  110  2.0000000000000002e-23  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  36.09 
 
 
248 aa  110  2.0000000000000002e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  37.96 
 
 
247 aa  110  2.0000000000000002e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  37.56 
 
 
251 aa  109  3e-23  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  35.23 
 
 
248 aa  109  3e-23  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  35.5 
 
 
250 aa  109  4.0000000000000004e-23  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  33.33 
 
 
231 aa  109  4.0000000000000004e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  5e-23  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  5e-23  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  5e-23  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  5e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  32.04 
 
 
250 aa  108  5e-23  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  5e-23  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  32.04 
 
 
250 aa  108  5e-23  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  34.91 
 
 
250 aa  108  6e-23  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
250 aa  108  6e-23  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30 
 
 
254 aa  108  7.000000000000001e-23  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  32.04 
 
 
250 aa  108  7.000000000000001e-23  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  37.87 
 
 
249 aa  108  8.000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  38.01 
 
 
254 aa  108  8.000000000000001e-23  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  34.32 
 
 
248 aa  107  1e-22  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  34.91 
 
 
254 aa  107  1e-22  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  36.08 
 
 
242 aa  107  1e-22  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  32.2 
 
 
249 aa  107  2e-22  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  31.49 
 
 
250 aa  107  2e-22  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  32.45 
 
 
250 aa  106  3e-22  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  34.32 
 
 
248 aa  106  3e-22  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  32.73 
 
 
250 aa  105  4e-22  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  34.09 
 
 
240 aa  106  4e-22  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  106  4e-22  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  33.73 
 
 
250 aa  105  5e-22  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  33.73 
 
 
250 aa  105  5e-22  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  33.73 
 
 
250 aa  105  5e-22  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  34.12 
 
 
244 aa  104  1e-21  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  32.75 
 
 
257 aa  104  1e-21  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  34.12 
 
 
244 aa  103  2e-21  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  32.93 
 
 
252 aa  103  2e-21  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>