More than 300 homologs were found in PanDaTox collection
for query gene Mnod_5030 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  100 
 
 
238 aa  479  1e-134  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  100 
 
 
238 aa  479  1e-134  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  72.5 
 
 
253 aa  317  1e-85  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  56.89 
 
 
254 aa  251  5.000000000000001e-66  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  55.16 
 
 
250 aa  244  6.999999999999999e-64  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  53.54 
 
 
245 aa  244  9.999999999999999e-64  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  51.52 
 
 
239 aa  243  9.999999999999999e-64  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  55.16 
 
 
250 aa  243  1.9999999999999999e-63  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  52.86 
 
 
246 aa  243  1.9999999999999999e-63  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  51.53 
 
 
239 aa  241  9e-63  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  50.65 
 
 
239 aa  239  2e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  49.35 
 
 
239 aa  231  1e-59  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  51.18 
 
 
237 aa  217  1e-55  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  41.7 
 
 
249 aa  175  6e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  43.29 
 
 
250 aa  172  2.9999999999999996e-42  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  41.15 
 
 
310 aa  169  2e-41  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  43.24 
 
 
248 aa  166  2e-40  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  43.24 
 
 
251 aa  166  4e-40  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  39.13 
 
 
262 aa  144  1e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  38.89 
 
 
248 aa  142  7e-33  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  39.13 
 
 
248 aa  140  1.9999999999999998e-32  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  40.79 
 
 
250 aa  139  3e-32  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  38.65 
 
 
248 aa  137  1e-31  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  38.65 
 
 
248 aa  137  1e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  38.83 
 
 
249 aa  137  2e-31  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  35.62 
 
 
256 aa  134  9.999999999999999e-31  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  38.35 
 
 
246 aa  130  1.0000000000000001e-29  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  36.12 
 
 
230 aa  131  1.0000000000000001e-29  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  33.91 
 
 
256 aa  129  3e-29  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  41.57 
 
 
230 aa  129  3e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  34.72 
 
 
241 aa  129  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  35.62 
 
 
231 aa  129  5.0000000000000004e-29  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  42.11 
 
 
247 aa  125  5e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  41.45 
 
 
227 aa  125  5e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  43.27 
 
 
231 aa  125  6e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  36.68 
 
 
232 aa  125  6e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.16 
 
 
242 aa  124  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  40.76 
 
 
231 aa  123  2e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  40.76 
 
 
236 aa  124  2e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  40.45 
 
 
211 aa  122  4e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  35.29 
 
 
240 aa  121  8e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  42.11 
 
 
215 aa  121  8e-27  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  41.52 
 
 
222 aa  120  1.9999999999999998e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  34.8 
 
 
240 aa  119  3e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  39.15 
 
 
227 aa  120  3e-26  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  33.65 
 
 
261 aa  119  6e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  33.65 
 
 
261 aa  119  6e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  118  9e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  31.15 
 
 
250 aa  117  9.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  9.999999999999999e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  41.82 
 
 
229 aa  117  9.999999999999999e-26  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  32.74 
 
 
249 aa  117  9.999999999999999e-26  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  9.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  9.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  36.87 
 
 
229 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  9.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  29.96 
 
 
244 aa  117  9.999999999999999e-26  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  31.43 
 
 
250 aa  117  9.999999999999999e-26  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  9.999999999999999e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  31.43 
 
 
250 aa  117  9.999999999999999e-26  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  41.82 
 
 
229 aa  117  9.999999999999999e-26  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  36.65 
 
 
235 aa  117  9.999999999999999e-26  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  30.53 
 
 
253 aa  117  1.9999999999999998e-25  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  42.94 
 
 
227 aa  117  1.9999999999999998e-25  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  116  1.9999999999999998e-25  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  31.15 
 
 
250 aa  117  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  32.3 
 
 
250 aa  116  3e-25  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  36.41 
 
 
230 aa  115  3.9999999999999997e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  40.8 
 
 
229 aa  116  3.9999999999999997e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  36.44 
 
 
244 aa  115  3.9999999999999997e-25  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
248 aa  115  3.9999999999999997e-25  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  37.7 
 
 
242 aa  115  5e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
248 aa  115  5e-25  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  30.74 
 
 
250 aa  115  5e-25  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  31.43 
 
 
250 aa  115  5e-25  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  31 
 
 
244 aa  115  6.9999999999999995e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  30.84 
 
 
257 aa  115  6.9999999999999995e-25  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  35.11 
 
 
247 aa  115  7.999999999999999e-25  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  36.36 
 
 
229 aa  115  7.999999999999999e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  31.86 
 
 
250 aa  115  8.999999999999998e-25  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  30.84 
 
 
244 aa  114  1.0000000000000001e-24  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  38.34 
 
 
204 aa  114  1.0000000000000001e-24  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  35.64 
 
 
242 aa  113  2.0000000000000002e-24  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  34.1 
 
 
232 aa  113  2.0000000000000002e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
254 aa  114  2.0000000000000002e-24  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  31.02 
 
 
250 aa  113  2.0000000000000002e-24  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  31.72 
 
 
250 aa  113  2.0000000000000002e-24  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  30.43 
 
 
244 aa  114  2.0000000000000002e-24  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  30.43 
 
 
244 aa  114  2.0000000000000002e-24  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  30.13 
 
 
244 aa  112  3e-24  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  30.57 
 
 
244 aa  113  3e-24  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  35.58 
 
 
243 aa  113  3e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  40.96 
 
 
226 aa  113  3e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  39.66 
 
 
228 aa  113  3e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  30.64 
 
 
239 aa  112  4.0000000000000004e-24  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  36.84 
 
 
242 aa  112  4.0000000000000004e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
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