More than 300 homologs were found in PanDaTox collection
for query gene RPC_4055 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_4055  transcriptional regulator FixK  100 
 
 
229 aa  467  1.0000000000000001e-131  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  84.72 
 
 
229 aa  398  9.999999999999999e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  84.28 
 
 
229 aa  394  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  82.61 
 
 
230 aa  390  1e-107  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  78.6 
 
 
229 aa  370  1e-102  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  72.02 
 
 
268 aa  325  4.0000000000000003e-88  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  73.46 
 
 
231 aa  322  2e-87  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  73.11 
 
 
231 aa  320  8e-87  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  67.36 
 
 
227 aa  262  3e-69  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  51.77 
 
 
230 aa  220  1.9999999999999999e-56  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  57.61 
 
 
229 aa  211  1e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  57.61 
 
 
229 aa  211  1e-53  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  56.7 
 
 
227 aa  205  4e-52  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  57.22 
 
 
230 aa  203  2e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  55.05 
 
 
227 aa  201  9.999999999999999e-51  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  53.37 
 
 
228 aa  197  7.999999999999999e-50  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  48.04 
 
 
220 aa  191  9e-48  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  50.27 
 
 
220 aa  182  4.0000000000000006e-45  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  45.45 
 
 
215 aa  180  1e-44  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  52.72 
 
 
229 aa  178  5.999999999999999e-44  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  47.09 
 
 
236 aa  177  2e-43  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  48.68 
 
 
222 aa  175  4e-43  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  46.39 
 
 
208 aa  172  2.9999999999999996e-42  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  47.83 
 
 
226 aa  166  2.9999999999999998e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  45.9 
 
 
204 aa  164  1.0000000000000001e-39  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  46.45 
 
 
230 aa  157  2e-37  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  45.11 
 
 
234 aa  154  2e-36  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  43.18 
 
 
211 aa  150  1e-35  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  44.07 
 
 
224 aa  143  2e-33  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  41.24 
 
 
242 aa  137  1e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  37.24 
 
 
262 aa  131  9e-30  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  37.5 
 
 
237 aa  127  1.0000000000000001e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  41.5 
 
 
211 aa  127  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  42.94 
 
 
246 aa  127  2.0000000000000002e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  39.55 
 
 
239 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  36.63 
 
 
239 aa  119  3e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  39.55 
 
 
239 aa  119  3e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  42.5 
 
 
253 aa  118  9e-26  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_009485  BBta_7766  nitrogen fixation regulation protein fixK  37.36 
 
 
235 aa  115  3.9999999999999997e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.701843  normal  0.257497 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  39.23 
 
 
239 aa  114  1.0000000000000001e-24  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  37.16 
 
 
248 aa  113  2.0000000000000002e-24  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  34.48 
 
 
245 aa  114  2.0000000000000002e-24  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  40.34 
 
 
235 aa  112  5e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  37.16 
 
 
251 aa  112  6e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  36.07 
 
 
249 aa  111  1.0000000000000001e-23  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  35.36 
 
 
244 aa  110  2.0000000000000002e-23  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  38.92 
 
 
250 aa  110  2.0000000000000002e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  35.75 
 
 
310 aa  109  4.0000000000000004e-23  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  39.08 
 
 
238 aa  108  5e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  39.08 
 
 
238 aa  108  5e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  38.32 
 
 
250 aa  108  5e-23  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  33.68 
 
 
242 aa  108  5e-23  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.36 
 
 
242 aa  107  1e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  39.13 
 
 
254 aa  105  5e-22  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  35.08 
 
 
247 aa  104  9e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  32.76 
 
 
243 aa  104  1e-21  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  33.16 
 
 
230 aa  103  2e-21  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  30.62 
 
 
232 aa  103  2e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  34.04 
 
 
231 aa  102  4e-21  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  32.97 
 
 
241 aa  102  6e-21  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  34.62 
 
 
242 aa  100  2e-20  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  32.98 
 
 
248 aa  99.4  4e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  32.98 
 
 
248 aa  99.4  4e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  35.36 
 
 
249 aa  99  5e-20  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  33.51 
 
 
248 aa  99.4  5e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  30.21 
 
 
250 aa  98.6  7e-20  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  42.48 
 
 
250 aa  97.8  1e-19  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  29.65 
 
 
250 aa  97.8  1e-19  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  34.55 
 
 
248 aa  96.7  2e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7770  putative nitrogen fixation regulation protein fixK  35 
 
 
256 aa  97.4  2e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.209002  normal  0.567558 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  97.4  2e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.3  3e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.3  3e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.3  3e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.3  3e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.3  3e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  30.1 
 
 
250 aa  96.7  3e-19  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  33.73 
 
 
248 aa  95.9  4e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  33.73 
 
 
248 aa  95.9  4e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  35.09 
 
 
211 aa  96.3  4e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  35.5 
 
 
274 aa  95.1  7e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  31.82 
 
 
253 aa  95.1  8e-19  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  29.69 
 
 
254 aa  95.1  8e-19  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  32.61 
 
 
240 aa  93.6  2e-18  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  38.95 
 
 
230 aa  94  2e-18  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  32.37 
 
 
250 aa  94  2e-18  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  29.08 
 
 
250 aa  94  2e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_009671  Oant_4644  CRP/FNR family transcriptional regulator  32.45 
 
 
232 aa  93.6  2e-18  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  29.08 
 
 
250 aa  94  2e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  29.03 
 
 
249 aa  93.6  3e-18  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  33.15 
 
 
403 aa  93.2  3e-18  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  31.35 
 
 
240 aa  92.8  4e-18  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  33.33 
 
 
261 aa  92.8  4e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  33.33 
 
 
261 aa  92.8  4e-18  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
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