More than 300 homologs were found in PanDaTox collection
for query gene BBta_5746 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  100 
 
 
237 aa  487  1e-137  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  59.01 
 
 
239 aa  274  1.0000000000000001e-72  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  57.26 
 
 
239 aa  272  4.0000000000000004e-72  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  58.11 
 
 
239 aa  270  1e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  57.21 
 
 
239 aa  265  2.9999999999999995e-70  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  53.36 
 
 
253 aa  231  9e-60  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  51.12 
 
 
238 aa  224  8e-58  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  51.12 
 
 
238 aa  224  8e-58  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  49.33 
 
 
246 aa  221  9.999999999999999e-57  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  48.48 
 
 
250 aa  218  6e-56  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  46.98 
 
 
245 aa  218  7.999999999999999e-56  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  48.48 
 
 
250 aa  217  1e-55  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  49.78 
 
 
254 aa  216  2.9999999999999998e-55  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  40.71 
 
 
310 aa  162  6e-39  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  40.48 
 
 
231 aa  160  2e-38  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  39.71 
 
 
241 aa  158  5e-38  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  38.84 
 
 
250 aa  155  5.0000000000000005e-37  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  38.46 
 
 
248 aa  154  1e-36  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  38.46 
 
 
251 aa  153  2e-36  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  38.54 
 
 
249 aa  150  1e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  40.69 
 
 
242 aa  147  1.0000000000000001e-34  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  43.08 
 
 
226 aa  147  2.0000000000000003e-34  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  35.59 
 
 
262 aa  147  2.0000000000000003e-34  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  36.84 
 
 
248 aa  145  6e-34  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  36.36 
 
 
248 aa  144  1e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  36.36 
 
 
248 aa  144  1e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  41.54 
 
 
222 aa  142  4e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  38.1 
 
 
230 aa  141  7e-33  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  38.05 
 
 
240 aa  141  9e-33  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  33.95 
 
 
248 aa  140  3e-32  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  38.05 
 
 
240 aa  140  3e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  35.55 
 
 
249 aa  138  7.999999999999999e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  42.77 
 
 
230 aa  135  6.0000000000000005e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  43.92 
 
 
236 aa  134  9.999999999999999e-31  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.86 
 
 
242 aa  134  1.9999999999999998e-30  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  43.02 
 
 
227 aa  132  3.9999999999999996e-30  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  40.88 
 
 
220 aa  132  3.9999999999999996e-30  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  39.32 
 
 
250 aa  132  6e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  38.46 
 
 
215 aa  130  2.0000000000000002e-29  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_007964  Nham_1258  Crp/FNR family transcriptional regulator  33.82 
 
 
241 aa  129  5.0000000000000004e-29  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  39.18 
 
 
230 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  37.5 
 
 
229 aa  127  1.0000000000000001e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  41.95 
 
 
234 aa  127  1.0000000000000001e-28  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  37.23 
 
 
231 aa  127  2.0000000000000002e-28  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_2547  Crp/FNR family transcriptional regulator  33.64 
 
 
246 aa  127  2.0000000000000002e-28  Ruegeria sp. TM1040  Bacteria  normal  0.389339  normal  0.365128 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  39.66 
 
 
228 aa  126  3e-28  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  34.04 
 
 
231 aa  125  6e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  39.88 
 
 
204 aa  125  6e-28  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  43.4 
 
 
230 aa  125  7e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  38.6 
 
 
229 aa  125  7e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  41.28 
 
 
229 aa  125  8.000000000000001e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  42.11 
 
 
227 aa  125  8.000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  41.28 
 
 
229 aa  124  9e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  40.62 
 
 
268 aa  123  2e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  38.73 
 
 
211 aa  123  2e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  38.01 
 
 
229 aa  123  3e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  37.43 
 
 
227 aa  123  3e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  44.52 
 
 
229 aa  123  3e-27  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_007406  Nwi_2061  Crp family transcriptional regulator  32.85 
 
 
241 aa  122  6e-27  Nitrobacter winogradskyi Nb-255  Bacteria  hitchhiker  0.00300081  normal 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  41.28 
 
 
247 aa  120  1.9999999999999998e-26  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  37.43 
 
 
229 aa  119  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  35.96 
 
 
211 aa  117  9.999999999999999e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  34.68 
 
 
242 aa  117  1.9999999999999998e-25  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  36.36 
 
 
220 aa  115  3.9999999999999997e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  39.9 
 
 
235 aa  111  8.000000000000001e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  37.17 
 
 
224 aa  111  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  30.13 
 
 
244 aa  110  2.0000000000000002e-23  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  37.36 
 
 
208 aa  109  4.0000000000000004e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  30.04 
 
 
244 aa  109  4.0000000000000004e-23  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  30.54 
 
 
244 aa  108  8.000000000000001e-23  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  30.13 
 
 
244 aa  106  3e-22  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  30.13 
 
 
244 aa  106  3e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  30.34 
 
 
244 aa  105  4e-22  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  36.31 
 
 
211 aa  106  4e-22  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  35.93 
 
 
243 aa  105  4e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  30.34 
 
 
244 aa  105  4e-22  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  30.34 
 
 
244 aa  105  5e-22  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_008254  Meso_2279  Crp/FNR family transcriptional regulator  30.23 
 
 
258 aa  104  9e-22  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  31.48 
 
 
256 aa  104  1e-21  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  28.77 
 
 
244 aa  103  2e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  29.8 
 
 
254 aa  103  2e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  33.53 
 
 
232 aa  103  2e-21  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  28.82 
 
 
244 aa  103  3e-21  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  31.02 
 
 
256 aa  103  3e-21  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  31.9 
 
 
243 aa  102  4e-21  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  26.67 
 
 
250 aa  102  6e-21  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_009049  Rsph17029_1230  CRP/FNR family transcriptional regulator  32.29 
 
 
263 aa  102  6e-21  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  26.67 
 
 
250 aa  102  6e-21  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_007493  RSP_2572  crpK, Fnr-type transcriptional regulator  32.29 
 
 
263 aa  102  6e-21  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  26.67 
 
 
250 aa  102  6e-21  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  26.67 
 
 
250 aa  102  6e-21  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  26.67 
 
 
250 aa  102  6e-21  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_008825  Mpe_A2201  transcriptional regulator  28.51 
 
 
262 aa  101  1e-20  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.586423 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  26.79 
 
 
250 aa  100  2e-20  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  30.73 
 
 
232 aa  100  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  31.41 
 
 
263 aa  100  2e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  25.33 
 
 
252 aa  99.8  3e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  31.8 
 
 
232 aa  99.4  4e-20  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  25.78 
 
 
250 aa  99.4  5e-20  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  25.78 
 
 
250 aa  99.4  5e-20  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
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