More than 300 homologs were found in PanDaTox collection
for query gene Rru_A3322 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  100 
 
 
262 aa  527  1e-149  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  41.59 
 
 
248 aa  177  2e-43  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  41.53 
 
 
249 aa  175  6e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  41.15 
 
 
251 aa  174  9.999999999999999e-43  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  41.44 
 
 
310 aa  166  5e-40  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  39.73 
 
 
250 aa  158  9e-38  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  44.04 
 
 
222 aa  156  3e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  37.17 
 
 
246 aa  151  1e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  39.64 
 
 
253 aa  150  1e-35  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  37.84 
 
 
250 aa  148  8e-35  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  35.98 
 
 
237 aa  145  7.0000000000000006e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  39.13 
 
 
238 aa  144  1e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  39.13 
 
 
238 aa  144  1e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.85 
 
 
242 aa  143  3e-33  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  38.5 
 
 
239 aa  142  5e-33  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  36.5 
 
 
245 aa  141  9.999999999999999e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  42.86 
 
 
226 aa  141  9.999999999999999e-33  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  40.62 
 
 
215 aa  141  9.999999999999999e-33  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  39.29 
 
 
229 aa  139  4.999999999999999e-32  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  37.5 
 
 
239 aa  138  1e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  36.4 
 
 
254 aa  137  1e-31  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  38.86 
 
 
231 aa  137  1e-31  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  38.12 
 
 
250 aa  138  1e-31  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  36.49 
 
 
239 aa  137  2e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  37.67 
 
 
250 aa  137  2e-31  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  38.27 
 
 
230 aa  136  3.0000000000000003e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  37.5 
 
 
239 aa  137  3.0000000000000003e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  36.63 
 
 
242 aa  136  4e-31  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  38.78 
 
 
229 aa  135  5e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  37.79 
 
 
274 aa  133  1.9999999999999998e-30  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  36.28 
 
 
230 aa  134  1.9999999999999998e-30  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  42.29 
 
 
230 aa  132  6.999999999999999e-30  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  37.24 
 
 
229 aa  131  1.0000000000000001e-29  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  35.19 
 
 
242 aa  131  1.0000000000000001e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  37.76 
 
 
229 aa  131  1.0000000000000001e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  35.4 
 
 
241 aa  130  2.0000000000000002e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
254 aa  129  4.0000000000000003e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  39.42 
 
 
236 aa  129  4.0000000000000003e-29  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  38.02 
 
 
229 aa  129  5.0000000000000004e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  38.02 
 
 
229 aa  129  5.0000000000000004e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  33.78 
 
 
250 aa  129  6e-29  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  33.78 
 
 
250 aa  129  6e-29  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  33.78 
 
 
250 aa  128  7.000000000000001e-29  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  35.27 
 
 
242 aa  128  8.000000000000001e-29  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  34.35 
 
 
231 aa  127  1.0000000000000001e-28  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  41.15 
 
 
235 aa  128  1.0000000000000001e-28  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  31.35 
 
 
250 aa  127  1.0000000000000001e-28  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  33.78 
 
 
250 aa  128  1.0000000000000001e-28  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  37.24 
 
 
231 aa  127  2.0000000000000002e-28  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  33.82 
 
 
253 aa  127  2.0000000000000002e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  34.68 
 
 
248 aa  127  2.0000000000000002e-28  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  33.48 
 
 
239 aa  126  3e-28  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  38.54 
 
 
227 aa  125  5e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  35.78 
 
 
249 aa  125  8.000000000000001e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  34.1 
 
 
232 aa  125  9e-28  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  38.38 
 
 
227 aa  124  1e-27  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  32.44 
 
 
250 aa  124  2e-27  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
249 aa  124  2e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  36.32 
 
 
227 aa  124  2e-27  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  32.44 
 
 
250 aa  124  2e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  35.86 
 
 
224 aa  124  2e-27  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  36.73 
 
 
254 aa  124  2e-27  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  35.52 
 
 
228 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  32.44 
 
 
252 aa  122  5e-27  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  33.33 
 
 
262 aa  122  7e-27  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  33.33 
 
 
242 aa  122  8e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  122  9e-27  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  122  9e-27  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  122  9e-27  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  122  9e-27  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  122  9e-27  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  121  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  121  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  121  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  35.09 
 
 
245 aa  121  9.999999999999999e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  121  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  121  9.999999999999999e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  34.71 
 
 
262 aa  121  9.999999999999999e-27  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  36.36 
 
 
220 aa  120  1.9999999999999998e-26  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  36.79 
 
 
234 aa  120  1.9999999999999998e-26  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  32.89 
 
 
250 aa  120  3e-26  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  120  3e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  120  3e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  32 
 
 
249 aa  120  3e-26  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  32.44 
 
 
249 aa  120  3e-26  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  120  3e-26  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  33.33 
 
 
250 aa  120  3e-26  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  120  3e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
250 aa  120  3e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  34.82 
 
 
257 aa  120  3e-26  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  34.82 
 
 
257 aa  119  3.9999999999999996e-26  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  32.93 
 
 
265 aa  119  3.9999999999999996e-26  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  37.11 
 
 
230 aa  119  4.9999999999999996e-26  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  33.33 
 
 
244 aa  119  6e-26  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  35.21 
 
 
243 aa  119  7e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  34.38 
 
 
257 aa  119  7e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  32.44 
 
 
250 aa  118  7.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  32.89 
 
 
254 aa  118  7.999999999999999e-26  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  31.06 
 
 
242 aa  118  9.999999999999999e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  40.11 
 
 
229 aa  117  9.999999999999999e-26  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
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