| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2014 |
|---|
| Symbol | |
|---|
| ID | 4252587 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 2398767 |
|---|
| End bp | 2399519 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638118627 |
|---|
| Product | fumarate/nitrate reduction transcriptional regulator |
|---|
| Protein accession | YP_734144 |
|---|
| Protein GI | 113970351 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000000422436 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACAATAG AGCAGAATAA AAACCGTCGT CCCGCCGCGA GTGGGTGCGC AATTCATTGT
CACGATTGCA GTATGGGTAC CCTTTGTATT CCGTTTACCC TCAATGCCAA CGAGCTCGAT
CAGCTCGATG ACATCATTGA GCGTAAAAAG CCAATTCAAA AAGGTGAGCA GATTTTTAAA
TCAGGCGATC CATTAAAGTC CTTGTTCGCC ATCCGCTCTG GTACTGTCAA AAGTTATACG
ATTACCGAAC AGGGCGATGA ACAGATCACC GGTTTCCATT TAGCGGGCGA TGTGATTGGT
TTTGACGGTA TTCATGCTCA ATCCCACCAG AGTTTTGCCC AAGCCTTAGA AACCTCCATG
GTATGTGAAA TCCCCTTCAA TATTCTCGAT GAGCTTTCAG GCAGCATGCC CAAGTTACGC
CAACAAATCA TGCGCTTAAT GAGTAATGAA ATCATGAGCG ATCAAGAAAT GATTTTATTG
CTGAGCAAGA AAAACGCTGA AGAGCGCCTC GCCGCGTTTA TCAGCAATCT TGCAAATCGC
TTTGGCAACC GTGGTTTTTC TCCGAAAGAA TTCCGTTTAA CCATGACCCG TGGTGACATT
GGTAACTACC TTGGCTTAAC CGTAGAAACC ATCAGCCGCT TGTTAGGCCG TTTCCAAAAG
TCAGGTTTGA TTGAAGTGAA AGGCAAGTAC ATCACCATCC TTGACCACCA CGAACTGAAT
CTCTTGGCAG GTAATGCCAG GATCGCCAGA TAA
|
|---|
| Protein sequence | MTIEQNKNRR PAASGCAIHC HDCSMGTLCI PFTLNANELD QLDDIIERKK PIQKGEQIFK
SGDPLKSLFA IRSGTVKSYT ITEQGDEQIT GFHLAGDVIG FDGIHAQSHQ SFAQALETSM
VCEIPFNILD ELSGSMPKLR QQIMRLMSNE IMSDQEMILL LSKKNAEERL AAFISNLANR
FGNRGFSPKE FRLTMTRGDI GNYLGLTVET ISRLLGRFQK SGLIEVKGKY ITILDHHELN
LLAGNARIAR
|
|---|
| |