More than 300 homologs were found in PanDaTox collection
for query gene Mrad2831_0408 on replicon NC_010505
Organism: Methylobacterium radiotolerans JCM 2831



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  100 
 
 
230 aa  465  9.999999999999999e-131  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  72.41 
 
 
229 aa  335  3.9999999999999995e-91  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  72.41 
 
 
229 aa  334  7.999999999999999e-91  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  69.48 
 
 
230 aa  300  1e-80  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  68.54 
 
 
227 aa  288  4e-77  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  74.27 
 
 
229 aa  284  1.0000000000000001e-75  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  66.83 
 
 
227 aa  268  7e-71  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  53.18 
 
 
231 aa  242  3.9999999999999997e-63  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2786  transcriptional regulator FixK  56.56 
 
 
229 aa  239  2e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  51.77 
 
 
231 aa  232  3e-60  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  53.42 
 
 
230 aa  232  3e-60  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  54.02 
 
 
229 aa  230  1e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  54.05 
 
 
229 aa  229  2e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  53.21 
 
 
229 aa  228  4e-59  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  56.63 
 
 
228 aa  222  4e-57  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  61.31 
 
 
268 aa  220  1.9999999999999999e-56  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  53.59 
 
 
227 aa  197  1.0000000000000001e-49  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  47.49 
 
 
215 aa  175  4e-43  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  50.25 
 
 
236 aa  172  2.9999999999999996e-42  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  44.34 
 
 
222 aa  172  5.999999999999999e-42  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  47.64 
 
 
220 aa  169  2e-41  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  46.77 
 
 
220 aa  166  4e-40  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  53.42 
 
 
234 aa  164  6.9999999999999995e-40  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  47.95 
 
 
204 aa  159  4e-38  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  46.88 
 
 
226 aa  158  8e-38  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  43.01 
 
 
230 aa  154  2e-36  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  44.19 
 
 
211 aa  154  2e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  42.4 
 
 
224 aa  149  5e-35  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  41.24 
 
 
242 aa  147  2.0000000000000003e-34  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  44.05 
 
 
208 aa  143  2e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  46.99 
 
 
239 aa  137  1e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  43.81 
 
 
246 aa  136  3.0000000000000003e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  46.99 
 
 
239 aa  136  3.0000000000000003e-31  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  46.39 
 
 
239 aa  135  4e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  45.78 
 
 
239 aa  131  6.999999999999999e-30  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  42.78 
 
 
253 aa  130  2.0000000000000002e-29  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  38.54 
 
 
262 aa  130  2.0000000000000002e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  40.1 
 
 
250 aa  130  3e-29  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  40.91 
 
 
237 aa  129  3e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  39.59 
 
 
250 aa  127  1.0000000000000001e-28  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  39.5 
 
 
245 aa  127  1.0000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  40.56 
 
 
211 aa  120  1.9999999999999998e-26  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  33.7 
 
 
243 aa  118  9e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  42.44 
 
 
254 aa  117  9.999999999999999e-26  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.43 
 
 
242 aa  116  1.9999999999999998e-25  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  41.21 
 
 
238 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  41.21 
 
 
238 aa  117  1.9999999999999998e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  36.41 
 
 
242 aa  116  3.9999999999999997e-25  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  37.37 
 
 
274 aa  115  7.999999999999999e-25  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  39.38 
 
 
247 aa  114  1.0000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  44.44 
 
 
250 aa  113  2.0000000000000002e-24  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  37.57 
 
 
235 aa  113  3e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  35.23 
 
 
240 aa  113  3e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  36.07 
 
 
241 aa  113  3e-24  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  36.08 
 
 
248 aa  112  4.0000000000000004e-24  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  36.08 
 
 
251 aa  111  8.000000000000001e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  35 
 
 
231 aa  110  1.0000000000000001e-23  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  40.85 
 
 
310 aa  110  2.0000000000000002e-23  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  36.36 
 
 
230 aa  110  3e-23  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  35.23 
 
 
240 aa  109  4.0000000000000004e-23  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  34.41 
 
 
248 aa  108  9.000000000000001e-23  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  34.41 
 
 
248 aa  108  9.000000000000001e-23  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  33.9 
 
 
239 aa  107  1e-22  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  34.95 
 
 
248 aa  107  1e-22  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  33.69 
 
 
244 aa  108  1e-22  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  35.35 
 
 
249 aa  107  1e-22  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  32.98 
 
 
242 aa  107  2e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009467  Acry_3214  CRP/FNR family transcriptional regulator  40 
 
 
230 aa  107  2e-22  Acidiphilium cryptum JF-5  Bacteria  normal  0.939046  n/a   
 
 
-
 
NC_007951  Bxe_A3927  Crp/FNR family transcriptional regulator  36.13 
 
 
242 aa  106  3e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.729399  hitchhiker  0.00211875 
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  33.33 
 
 
232 aa  106  3e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_008686  Pden_1850  CRP/FNR family transcriptional regulator  34.05 
 
 
211 aa  105  8e-22  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  31.36 
 
 
248 aa  104  1e-21  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0660  transcriptional regulator  33.15 
 
 
249 aa  103  2e-21  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  31.48 
 
 
242 aa  103  2e-21  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  37.06 
 
 
256 aa  103  2e-21  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  33.5 
 
 
254 aa  103  2e-21  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  31.48 
 
 
242 aa  103  3e-21  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  32.07 
 
 
250 aa  101  1e-20  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  31.48 
 
 
242 aa  100  2e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  31.28 
 
 
250 aa  100  2e-20  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  33.14 
 
 
250 aa  100  2e-20  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  31.28 
 
 
254 aa  100  3e-20  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  30.81 
 
 
250 aa  100  3e-20  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  30.81 
 
 
250 aa  100  3e-20  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  32 
 
 
252 aa  99.8  3e-20  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  31.52 
 
 
250 aa  99.4  4e-20  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  36.26 
 
 
256 aa  99  5e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  31.84 
 
 
248 aa  99  6e-20  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  32.54 
 
 
248 aa  99  6e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  32.54 
 
 
248 aa  99  6e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  31.95 
 
 
250 aa  98.6  7e-20  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  98.6  7e-20  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  98.6  7e-20  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  98.6  7e-20  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  98.6  7e-20  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  30.77 
 
 
250 aa  98.6  7e-20  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  31.95 
 
 
250 aa  98.6  8e-20  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  31.28 
 
 
250 aa  98.6  8e-20  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  31.95 
 
 
250 aa  98.6  8e-20  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  31.95 
 
 
250 aa  98.6  8e-20  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
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