More than 300 homologs were found in PanDaTox collection
for query gene BBta_2786 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2786  transcriptional regulator FixK  100 
 
 
229 aa  468  1.0000000000000001e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0460697  normal  0.11454 
 
 
-
 
NC_007778  RPB_1361  transcriptional regulator FixK  79.91 
 
 
229 aa  372  1e-102  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0646149  normal 
 
 
-
 
NC_007925  RPC_4055  transcriptional regulator FixK  78.6 
 
 
229 aa  370  1e-102  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4729  transcriptional regulator FixK  78.21 
 
 
230 aa  370  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1340  transcriptional regulator FixK  80 
 
 
229 aa  369  1e-101  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.324269  normal 
 
 
-
 
NC_007964  Nham_1951  transcriptional regulator FixK  72.93 
 
 
231 aa  337  8e-92  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_1036  transcriptional regulator FixK  72.05 
 
 
231 aa  332  3e-90  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007960  Nham_4375  Crp/FNR family transcriptional regulator  71.1 
 
 
268 aa  322  2e-87  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  69.43 
 
 
227 aa  271  4.0000000000000004e-72  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5386  transcriptional regulator, Crp/Fnr family  55.25 
 
 
230 aa  224  1e-57  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.662421  n/a   
 
 
-
 
NC_011757  Mchl_3812  transcriptional regulator, Crp/Fnr family  50.22 
 
 
229 aa  216  2e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3505  regulatory protein Crp  50.22 
 
 
229 aa  216  2.9999999999999998e-55  Methylobacterium extorquens PA1  Bacteria  normal  0.021842  normal 
 
 
-
 
NC_010511  M446_6107  Crp/FNR family transcriptional regulator  56.57 
 
 
227 aa  210  1e-53  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0266042 
 
 
-
 
NC_010505  Mrad2831_0408  Crp/FNR family transcriptional regulator  55.87 
 
 
230 aa  210  1e-53  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6927  Crp/FNR family transcriptional regulator  56.99 
 
 
227 aa  204  7e-52  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.422372 
 
 
-
 
NC_011894  Mnod_4871  transcriptional regulator, Crp/Fnr family  49.56 
 
 
228 aa  202  3e-51  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3266  cyclic nucleotide-binding  51.02 
 
 
220 aa  199  3e-50  Rhodopseudomonas palustris BisB5  Bacteria  normal  decreased coverage  0.00116153 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  46.38 
 
 
215 aa  189  2e-47  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
NC_010725  Mpop_3889  transcriptional regulator, Crp/Fnr family  52.85 
 
 
229 aa  182  3e-45  Methylobacterium populi BJ001  Bacteria  normal  normal  0.128439 
 
 
-
 
NC_009720  Xaut_1746  CRP/FNR family transcriptional regulator  46.86 
 
 
236 aa  179  2.9999999999999997e-44  Xanthobacter autotrophicus Py2  Bacteria  normal  0.753218  normal  0.546792 
 
 
-
 
NC_010338  Caul_2975  Crp/FNR family transcriptional regulator  50.27 
 
 
220 aa  179  2.9999999999999997e-44  Caulobacter sp. K31  Bacteria  normal  0.169439  normal  0.307783 
 
 
-
 
NC_010505  Mrad2831_2581  Crp/FNR family transcriptional regulator  49.21 
 
 
222 aa  179  2.9999999999999997e-44  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009475  BBta_p0192  CRP family transcriptional regulator  44.66 
 
 
230 aa  168  6e-41  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2158  Crp/FNR family transcriptional regulator  44.39 
 
 
208 aa  168  6e-41  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.198273  normal  0.103025 
 
 
-
 
NC_010505  Mrad2831_3277  Crp/FNR family transcriptional regulator  47.57 
 
 
226 aa  166  4e-40  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2457  Crp/FNR family transcriptional regulator  44.5 
 
 
204 aa  163  2.0000000000000002e-39  Caulobacter sp. K31  Bacteria  normal  0.325923  normal  0.600278 
 
 
-
 
NC_011666  Msil_1823  transcriptional regulator, Crp/Fnr family  44.32 
 
 
234 aa  154  1e-36  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0333657 
 
 
-
 
NC_008254  Meso_2220  transcriptional regulator FixK  42.6 
 
 
224 aa  150  2e-35  Chelativorans sp. BNC1  Bacteria  normal  0.552775  n/a   
 
 
-
 
NC_009621  Smed_6270  transcriptional regulator FixK  39.9 
 
 
211 aa  149  5e-35  Sinorhizobium medicae WSM419  Bacteria  normal  0.967473  normal  0.128199 
 
 
-
 
NC_009719  Plav_2039  CRP/FNR family transcriptional regulator  37.66 
 
 
242 aa  140  1.9999999999999998e-32  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191538  hitchhiker  0.00387918 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  37.76 
 
 
262 aa  131  1.0000000000000001e-29  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_009621  Smed_5184  transcriptional regulator FixK  41.18 
 
 
211 aa  130  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.639909 
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  42.53 
 
 
246 aa  129  5.0000000000000004e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0946  Crp/FNR family transcriptional regulator  41.08 
 
 
253 aa  123  2e-27  Methylobacterium sp. 4-46  Bacteria  normal  0.336903  normal 
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  37.43 
 
 
237 aa  119  3e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  38.98 
 
 
239 aa  117  9.999999999999999e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  40.8 
 
 
238 aa  116  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  40.8 
 
 
238 aa  116  3e-25  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1357  Crp/Fnr family transcriptional regulator  36.06 
 
 
239 aa  116  3e-25  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  35.58 
 
 
239 aa  115  5e-25  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  38.01 
 
 
245 aa  115  6.9999999999999995e-25  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_007925  RPC_4039  Crp/FNR family transcriptional regulator  37.74 
 
 
239 aa  114  8.999999999999998e-25  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.70749  normal 
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  35.87 
 
 
249 aa  113  3e-24  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  36.41 
 
 
248 aa  112  4.0000000000000004e-24  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  36.27 
 
 
310 aa  112  4.0000000000000004e-24  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1742  CRP/FNR family transcriptional regulator  37.36 
 
 
242 aa  112  6e-24  Sinorhizobium medicae WSM419  Bacteria  normal  0.275504  normal  0.265558 
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  36.41 
 
 
251 aa  111  9e-24  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_008228  Patl_2699  Crp/FNR family transcriptional regulator  32.11 
 
 
232 aa  111  1.0000000000000001e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.276502  n/a   
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  37.72 
 
 
250 aa  108  7.000000000000001e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_011894  Mnod_6164  transcriptional regulator, Crp/Fnr family  36.13 
 
 
247 aa  107  1e-22  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.257657  n/a   
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  37.13 
 
 
250 aa  107  2e-22  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  40 
 
 
250 aa  107  2e-22  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_011989  Avi_2026  transcriptional activator Crp family  32.79 
 
 
241 aa  106  3e-22  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  39.13 
 
 
254 aa  106  3e-22  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_009485  BBta_7766  nitrogen fixation regulation protein fixK  36.21 
 
 
235 aa  106  4e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.701843  normal  0.257497 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  34.59 
 
 
231 aa  105  6e-22  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_007953  Bxe_C0749  Crp/FNR family transcriptional regulator  32.64 
 
 
242 aa  105  6e-22  Burkholderia xenovorans LB400  Bacteria  normal  0.887641  normal  0.079497 
 
 
-
 
NC_009484  Acry_0576  CRP/FNR family transcriptional regulator  36.36 
 
 
235 aa  104  1e-21  Acidiphilium cryptum JF-5  Bacteria  normal  0.670039  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  35.16 
 
 
242 aa  104  1e-21  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_1678  Crp/FNR family transcriptional regulator  32.67 
 
 
230 aa  104  1e-21  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.330352  normal 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  32.29 
 
 
263 aa  103  2e-21  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1273  cAMP-binding protein  33.33 
 
 
243 aa  102  4e-21  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  35.2 
 
 
403 aa  102  4e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  31.41 
 
 
244 aa  100  2e-20  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  31.96 
 
 
256 aa  98.6  7e-20  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  32.95 
 
 
244 aa  98.6  7e-20  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  32.95 
 
 
244 aa  98.6  7e-20  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_007493  RSP_0698  Crp-Fnr regulatory protein (FnrL)  32.29 
 
 
248 aa  98.2  9e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2353  CRP/FNR family transcriptional regulator  32.29 
 
 
248 aa  98.2  9e-20  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.689366  normal  0.139893 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  31.38 
 
 
250 aa  97.8  1e-19  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  97.4  1e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  97.8  1e-19  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  97.8  1e-19  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  97.8  1e-19  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  98.2  1e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  35.26 
 
 
274 aa  97.8  1e-19  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  97.4  1e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_009428  Rsph17025_0532  CRP/FNR family transcriptional regulator  32.81 
 
 
248 aa  98.2  1e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.283437 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  97.4  1e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  97.8  1e-19  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  97.4  1e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  31.38 
 
 
250 aa  97.8  1e-19  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  30.89 
 
 
250 aa  97.4  1e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  31.96 
 
 
256 aa  98.2  1e-19  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  30.85 
 
 
250 aa  97.1  2e-19  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  35.71 
 
 
242 aa  96.7  3e-19  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  30.22 
 
 
254 aa  96.7  3e-19  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_3858  Crp/FNR family transcriptional regulator  34.05 
 
 
248 aa  96.3  3e-19  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  30.85 
 
 
250 aa  96.3  3e-19  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  33.52 
 
 
244 aa  95.9  4e-19  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  31.52 
 
 
250 aa  95.9  5e-19  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  29.73 
 
 
244 aa  95.5  6e-19  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_2118  transcriptional regulator, Crp/Fnr family  33.52 
 
 
240 aa  95.5  6e-19  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  hitchhiker  0.00291012 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  32.18 
 
 
232 aa  95.1  7e-19  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  30.68 
 
 
250 aa  95.1  8e-19  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_012850  Rleg_2360  transcriptional regulator, Crp/Fnr family  31.35 
 
 
240 aa  94.7  1e-18  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.948966  hitchhiker  0.00636029 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  30.22 
 
 
250 aa  94.4  1e-18  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  34.62 
 
 
242 aa  94.7  1e-18  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  30.22 
 
 
250 aa  94.4  1e-18  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  34.62 
 
 
242 aa  94.4  1e-18  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
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