More than 300 homologs were found in PanDaTox collection
for query gene Rpic_1111 on replicon NC_010682
Organism: Ralstonia pickettii 12J



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  100 
 
 
242 aa  488  1e-137  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  98.76 
 
 
242 aa  481  1e-135  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  93.8 
 
 
242 aa  461  1e-129  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  77.19 
 
 
232 aa  374  1e-103  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  76.75 
 
 
232 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  62.83 
 
 
256 aa  307  8e-83  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  60.62 
 
 
256 aa  296  3e-79  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  55.9 
 
 
246 aa  270  2e-71  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  52.84 
 
 
242 aa  265  5e-70  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  52.84 
 
 
247 aa  265  5e-70  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  52.14 
 
 
247 aa  260  1e-68  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  52.84 
 
 
251 aa  258  5.0000000000000005e-68  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  52.21 
 
 
245 aa  258  6e-68  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  50.66 
 
 
239 aa  255  3e-67  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  50.22 
 
 
262 aa  253  2.0000000000000002e-66  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  52.84 
 
 
244 aa  253  2.0000000000000002e-66  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  51.56 
 
 
265 aa  251  5.000000000000001e-66  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  53.28 
 
 
269 aa  249  4e-65  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  52.47 
 
 
274 aa  244  6.999999999999999e-64  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  48.68 
 
 
250 aa  238  6.999999999999999e-62  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  48.67 
 
 
247 aa  238  6.999999999999999e-62  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  52.04 
 
 
262 aa  234  9e-61  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  49.77 
 
 
223 aa  231  8.000000000000001e-60  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  49.55 
 
 
272 aa  228  6e-59  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4212  cyclic nucleotide-binding: regulatory protein, Crp  47.88 
 
 
303 aa  228  8e-59  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  49.33 
 
 
264 aa  226  2e-58  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  45.45 
 
 
267 aa  226  2e-58  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  44.25 
 
 
257 aa  221  6e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  44.25 
 
 
257 aa  221  6e-57  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  44.25 
 
 
257 aa  219  1.9999999999999999e-56  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  43.81 
 
 
257 aa  217  1e-55  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  43.22 
 
 
257 aa  217  1e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  43.56 
 
 
260 aa  216  2e-55  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  43.22 
 
 
259 aa  216  2.9999999999999998e-55  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  42.92 
 
 
259 aa  214  9e-55  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  42.92 
 
 
259 aa  214  9e-55  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  42.92 
 
 
259 aa  214  9e-55  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  41.85 
 
 
266 aa  214  9.999999999999999e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  42.92 
 
 
260 aa  212  2.9999999999999995e-54  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  42.92 
 
 
260 aa  212  2.9999999999999995e-54  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  42.92 
 
 
260 aa  212  2.9999999999999995e-54  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  42.04 
 
 
260 aa  212  2.9999999999999995e-54  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  42.73 
 
 
261 aa  213  2.9999999999999995e-54  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  42.92 
 
 
260 aa  212  2.9999999999999995e-54  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  45.29 
 
 
254 aa  212  3.9999999999999995e-54  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  42.92 
 
 
242 aa  212  3.9999999999999995e-54  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  45.37 
 
 
218 aa  212  3.9999999999999995e-54  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  42.92 
 
 
242 aa  212  3.9999999999999995e-54  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  44.49 
 
 
248 aa  212  4.9999999999999996e-54  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  41.99 
 
 
259 aa  211  9e-54  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  44.98 
 
 
269 aa  211  1e-53  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  42.29 
 
 
253 aa  209  2e-53  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  41.99 
 
 
259 aa  210  2e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  41.99 
 
 
259 aa  210  2e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  41.99 
 
 
259 aa  210  2e-53  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  41.56 
 
 
250 aa  209  3e-53  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  43.61 
 
 
248 aa  209  4e-53  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  44.91 
 
 
224 aa  208  5e-53  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
250 aa  208  6e-53  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  42.04 
 
 
259 aa  208  7e-53  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  41.18 
 
 
250 aa  208  7e-53  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  44.25 
 
 
244 aa  207  9e-53  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  41.2 
 
 
249 aa  207  1e-52  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  206  2e-52  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
254 aa  207  2e-52  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  44.05 
 
 
248 aa  206  2e-52  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  41.63 
 
 
250 aa  207  2e-52  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  42.02 
 
 
252 aa  206  2e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  206  2e-52  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  40.95 
 
 
249 aa  206  3e-52  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
250 aa  206  3e-52  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  206  3e-52  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  43.17 
 
 
248 aa  206  3e-52  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  43.17 
 
 
248 aa  206  3e-52  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
250 aa  206  3e-52  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  42.17 
 
 
257 aa  206  3e-52  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  42.48 
 
 
250 aa  205  4e-52  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  205  4e-52  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  205  4e-52  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
250 aa  206  4e-52  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  205  4e-52  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  205  4e-52  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  205  4e-52  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  44.39 
 
 
261 aa  205  5e-52  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  44.39 
 
 
261 aa  205  5e-52  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
248 aa  205  5e-52  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  42.13 
 
 
250 aa  205  6e-52  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  204  8e-52  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  204  8e-52  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  204  8e-52  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  204  8e-52  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  43.32 
 
 
250 aa  204  8e-52  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  42.48 
 
 
250 aa  204  8e-52  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
248 aa  204  9e-52  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  42.86 
 
 
249 aa  204  9e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  41.48 
 
 
254 aa  204  9e-52  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  42.73 
 
 
251 aa  204  1e-51  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  42.73 
 
 
251 aa  204  1e-51  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  42.73 
 
 
251 aa  204  1e-51  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  42.73 
 
 
251 aa  204  1e-51  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
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