More than 300 homologs were found in PanDaTox collection
for query gene Pnec_1356 on replicon NC_010531
Organism: Polynucleobacter necessarius subsp. necessarius STIR1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  100 
 
 
256 aa  528  1e-149  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  90.23 
 
 
256 aa  485  1e-136  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  61.5 
 
 
242 aa  298  4e-80  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  60.62 
 
 
242 aa  297  1e-79  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  60.62 
 
 
242 aa  296  3e-79  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  57.59 
 
 
232 aa  295  7e-79  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  57.59 
 
 
232 aa  290  1e-77  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  51.52 
 
 
246 aa  252  3e-66  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  51.11 
 
 
247 aa  242  3e-63  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_1692  Crp/FNR family transcriptional regulator  49.77 
 
 
244 aa  241  1e-62  Cupriavidus metallidurans CH34  Bacteria  normal  0.816346  normal 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  48.29 
 
 
265 aa  241  1e-62  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  47.56 
 
 
262 aa  240  2e-62  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  50.91 
 
 
245 aa  237  1e-61  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  46.67 
 
 
247 aa  237  1e-61  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  45.42 
 
 
239 aa  237  1e-61  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  46.72 
 
 
242 aa  236  3e-61  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  48.44 
 
 
251 aa  232  4.0000000000000004e-60  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  47.39 
 
 
254 aa  227  1e-58  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  51.1 
 
 
269 aa  223  2e-57  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  43.83 
 
 
257 aa  222  4e-57  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  46.93 
 
 
274 aa  222  4e-57  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  43.83 
 
 
257 aa  222  4e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  44.26 
 
 
257 aa  222  4.9999999999999996e-57  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  43.83 
 
 
257 aa  221  6e-57  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  48.18 
 
 
272 aa  221  9.999999999999999e-57  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  48.68 
 
 
262 aa  220  1.9999999999999999e-56  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  46.67 
 
 
247 aa  219  3e-56  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  47.03 
 
 
223 aa  219  3e-56  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  46.22 
 
 
264 aa  219  3e-56  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  42.74 
 
 
267 aa  219  3e-56  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  44.64 
 
 
260 aa  217  1e-55  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  43.95 
 
 
266 aa  217  2e-55  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  44.64 
 
 
260 aa  216  2.9999999999999998e-55  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  44.64 
 
 
260 aa  216  2.9999999999999998e-55  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  44.64 
 
 
260 aa  216  2.9999999999999998e-55  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  44.64 
 
 
260 aa  216  2.9999999999999998e-55  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  44.64 
 
 
242 aa  215  5e-55  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  44.64 
 
 
242 aa  215  5e-55  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  43.35 
 
 
257 aa  214  9e-55  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  43.16 
 
 
248 aa  214  9.999999999999999e-55  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  43.72 
 
 
259 aa  213  1.9999999999999998e-54  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  43.35 
 
 
259 aa  213  1.9999999999999998e-54  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  44.14 
 
 
259 aa  213  2.9999999999999995e-54  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  44.14 
 
 
259 aa  213  2.9999999999999995e-54  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  44.14 
 
 
259 aa  213  2.9999999999999995e-54  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  45.83 
 
 
218 aa  213  2.9999999999999995e-54  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  41.49 
 
 
248 aa  212  4.9999999999999996e-54  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  43.5 
 
 
630 aa  211  5.999999999999999e-54  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  210  1e-53  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  43.75 
 
 
259 aa  211  1e-53  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  210  1e-53  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  44.34 
 
 
261 aa  210  1e-53  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  210  1e-53  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  210  1e-53  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  43.11 
 
 
251 aa  211  1e-53  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  42.61 
 
 
260 aa  210  1e-53  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  211  1e-53  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  43.11 
 
 
251 aa  210  2e-53  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  42.24 
 
 
249 aa  209  3e-53  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  42.31 
 
 
248 aa  209  3e-53  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  42.31 
 
 
248 aa  209  3e-53  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  43.84 
 
 
403 aa  208  7e-53  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  42.86 
 
 
259 aa  207  1e-52  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  42.86 
 
 
259 aa  207  1e-52  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  41.49 
 
 
248 aa  207  1e-52  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  42.86 
 
 
259 aa  207  1e-52  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  43.05 
 
 
249 aa  207  2e-52  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  43.69 
 
 
224 aa  206  3e-52  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  42.02 
 
 
252 aa  205  6e-52  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  42.67 
 
 
250 aa  204  1e-51  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  1e-51  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  1e-51  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  1e-51  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  1e-51  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  1e-51  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  42.67 
 
 
250 aa  204  2e-51  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  43.11 
 
 
250 aa  202  4e-51  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  41.2 
 
 
253 aa  201  9e-51  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  44.91 
 
 
261 aa  201  9.999999999999999e-51  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  44.91 
 
 
261 aa  201  9.999999999999999e-51  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  40.69 
 
 
250 aa  201  9.999999999999999e-51  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  41.67 
 
 
250 aa  201  9.999999999999999e-51  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  42.22 
 
 
250 aa  199  3e-50  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  42.22 
 
 
248 aa  199  3e-50  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  42.22 
 
 
248 aa  199  3e-50  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  42.04 
 
 
248 aa  199  3.9999999999999996e-50  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  40.89 
 
 
249 aa  198  7.999999999999999e-50  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  40.44 
 
 
249 aa  198  7.999999999999999e-50  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  41.78 
 
 
250 aa  198  7.999999999999999e-50  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  41.59 
 
 
248 aa  198  7.999999999999999e-50  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  41.78 
 
 
250 aa  198  7.999999999999999e-50  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  41.78 
 
 
250 aa  197  1.0000000000000001e-49  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  40.51 
 
 
250 aa  197  2.0000000000000003e-49  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  40.51 
 
 
250 aa  197  2.0000000000000003e-49  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  40.08 
 
 
250 aa  196  2.0000000000000003e-49  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>