More than 300 homologs were found in PanDaTox collection
for query gene GM21_2448 on replicon NC_012918
Organism: Geobacter sp. M21



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012918  GM21_2448  transcriptional regulator, Crp/Fnr family  100 
 
 
238 aa  489  1e-137  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_1802  transcriptional regulator, Crp/Fnr family  96.64 
 
 
238 aa  474  1e-133  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  55.22 
 
 
238 aa  272  4.0000000000000004e-72  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
NC_002939  GSU1992  Crp/FNR family transcriptional regulator  45.91 
 
 
226 aa  224  8e-58  Geobacter sulfurreducens PCA  Bacteria  normal  0.103472  n/a   
 
 
-
 
NC_007517  Gmet_0750  Crp/FNR family transcriptional regulator  44.84 
 
 
238 aa  218  8.999999999999998e-56  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2323  CRP/FNR family transcriptional regulator  45.83 
 
 
233 aa  217  1e-55  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00053006  n/a   
 
 
-
 
NC_011146  Gbem_1063  transcriptional regulator, Crp/Fnr family  41.56 
 
 
238 aa  209  3e-53  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3198  transcriptional regulator, Crp/Fnr family  42.86 
 
 
221 aa  204  7e-52  Geobacter sp. M21  Bacteria  n/a    normal  0.90573 
 
 
-
 
NC_008609  Ppro_1835  Crp/FNR family transcriptional regulator  30.73 
 
 
250 aa  133  1.9999999999999998e-30  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0256984  n/a   
 
 
-
 
NC_011661  Dtur_1814  transcriptional regulator, Crp/Fnr family  32.39 
 
 
225 aa  128  7.000000000000001e-29  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  33.49 
 
 
232 aa  123  3e-27  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  32.06 
 
 
239 aa  122  4e-27  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.35 
 
 
226 aa  121  9e-27  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  31.28 
 
 
236 aa  110  2.0000000000000002e-23  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.05 
 
 
227 aa  109  4.0000000000000004e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  30.81 
 
 
236 aa  109  5e-23  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  30.7 
 
 
231 aa  108  5e-23  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  33.17 
 
 
243 aa  109  5e-23  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  28.91 
 
 
236 aa  108  6e-23  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  30.81 
 
 
219 aa  107  1e-22  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  28.17 
 
 
225 aa  107  2e-22  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  28.91 
 
 
236 aa  106  3e-22  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  28.44 
 
 
225 aa  103  3e-21  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1294  cyclic nucleotide-binding: regulatory protein, Crp  30.24 
 
 
220 aa  100  2e-20  Dechloromonas aromatica RCB  Bacteria  normal  0.957461  normal  0.413121 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  31.9 
 
 
227 aa  99.4  5e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_4102  transcriptional regulator, Crp/Fnr family  28.71 
 
 
251 aa  96.7  3e-19  Haliangium ochraceum DSM 14365  Bacteria  normal  0.363021  normal  0.0126572 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25.12 
 
 
226 aa  95.9  5e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  28.05 
 
 
222 aa  95.5  7e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  27.19 
 
 
222 aa  94.4  1e-18  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_2129  Crp/Fnr family transcriptional regulator  28.57 
 
 
225 aa  94.7  1e-18  Meiothermus ruber DSM 1279  Bacteria  normal  0.185639  normal  0.344505 
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  29.05 
 
 
236 aa  92.8  4e-18  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  24.66 
 
 
228 aa  92.4  5e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  24.88 
 
 
224 aa  92  7e-18  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1061  Crp family transcriptional regulator  30.32 
 
 
214 aa  91.3  1e-17  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.0336611  n/a   
 
 
-
 
NC_008025  Dgeo_0106  Crp/FNR family transcriptional regulator  28.5 
 
 
254 aa  91.3  1e-17  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  28.57 
 
 
236 aa  91.7  1e-17  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_008312  Tery_1557  Crp/FNR family transcriptional regulator  30.73 
 
 
234 aa  91.3  1e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.986178 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  23.77 
 
 
228 aa  90.5  2e-17  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  27.03 
 
 
222 aa  90.9  2e-17  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  29.53 
 
 
348 aa  90.9  2e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_008148  Rxyl_0860  Crp/FNR family transcriptional regulator  28.79 
 
 
234 aa  90.5  2e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.693979  n/a   
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  23.32 
 
 
225 aa  90.5  2e-17  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2750  transcriptional regulator, Crp/Fnr family  24.66 
 
 
222 aa  90.5  2e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  decreased coverage  0.0000000354449  normal  0.602467 
 
 
-
 
NC_011894  Mnod_4596  transcriptional regulator, Crp/Fnr family  25.23 
 
 
230 aa  90.5  2e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3066  Crp/FNR family transcriptional regulator  30 
 
 
232 aa  90.1  3e-17  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  28.22 
 
 
230 aa  89.7  3e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0362  Crp/FNR family transcriptional regulator  27.68 
 
 
234 aa  90.1  3e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.74387  normal  0.571703 
 
 
-
 
NC_014248  Aazo_3421  Crp/Fnr family transcriptional regulator  29.19 
 
 
232 aa  89.7  3e-17  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  27.7 
 
 
228 aa  89.4  4e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_009380  Strop_1659  cyclic nucleotide-binding  25 
 
 
223 aa  89.4  5e-17  Salinispora tropica CNB-440  Bacteria  normal  0.834954  normal 
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  26.29 
 
 
225 aa  89  6e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  24.22 
 
 
225 aa  88.6  9e-17  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0723  Crp/FNR family transcriptional regulator  25.12 
 
 
228 aa  87.8  1e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.362046  normal  0.190371 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  27.73 
 
 
229 aa  88.2  1e-16  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_002936  DET0299  Crp/FNR family transcriptional regulator  26.9 
 
 
247 aa  87  2e-16  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  23.77 
 
 
225 aa  87  2e-16  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  25.24 
 
 
226 aa  87.4  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  29.38 
 
 
228 aa  87.4  2e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  23.32 
 
 
226 aa  87.4  2e-16  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  26.82 
 
 
225 aa  87  3e-16  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  24.42 
 
 
236 aa  86.7  3e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  23.94 
 
 
226 aa  86.3  4e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009441  Fjoh_1583  CRP/FNR family transcriptional regulator  31.02 
 
 
198 aa  86.3  4e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.547464  n/a   
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.23 
 
 
223 aa  86.3  4e-16  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  21.97 
 
 
228 aa  85.5  6e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  26.51 
 
 
226 aa  85.5  6e-16  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009953  Sare_1644  Crp/FNR family transcriptional regulator  24.07 
 
 
223 aa  85.5  7e-16  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4219  Crp/FNR family transcriptional regulator  28.19 
 
 
219 aa  85.5  7e-16  Polaromonas sp. JS666  Bacteria  normal  0.408304  normal 
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  24.89 
 
 
226 aa  84.7  0.000000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  25.12 
 
 
234 aa  84.7  0.000000000000001  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  27.53 
 
 
352 aa  83.6  0.000000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  25.37 
 
 
226 aa  84.3  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  26.4 
 
 
230 aa  84  0.000000000000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  25.56 
 
 
226 aa  84  0.000000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  24.89 
 
 
224 aa  83.2  0.000000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  26.34 
 
 
225 aa  83.2  0.000000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_010814  Glov_0629  transcriptional regulator, Crp/Fnr family  28.77 
 
 
230 aa  83.6  0.000000000000003  Geobacter lovleyi SZ  Bacteria  decreased coverage  0.0000285446  n/a   
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  24.07 
 
 
226 aa  82.4  0.000000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_013440  Hoch_2081  transcriptional regulator, Crp/Fnr family  25.12 
 
 
229 aa  82  0.000000000000007  Haliangium ochraceum DSM 14365  Bacteria  normal  0.264181  normal 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  26.24 
 
 
225 aa  82  0.000000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_005945  BAS1984  Crp/FNR family transcriptional regulator  26.87 
 
 
230 aa  82  0.000000000000008  Bacillus anthracis str. Sterne  Bacteria  normal  0.513682  n/a   
 
 
-
 
NC_005957  BT9727_1958  Crp/FNR family transcriptional regulator  26.87 
 
 
230 aa  81.6  0.000000000000009  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0304498  n/a   
 
 
-
 
NC_006274  BCZK1936  Crp/FNR family transcriptional regulator  26.87 
 
 
230 aa  81.6  0.000000000000009  Bacillus cereus E33L  Bacteria  normal  0.308171  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  24.66 
 
 
226 aa  81.6  0.000000000000009  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011772  BCG9842_B3176  transcriptional regulator, Crp/Fnr family  26.87 
 
 
230 aa  81.6  0.000000000000009  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_2165  transcriptional regulator, Crp/Fnr family  26.87 
 
 
230 aa  81.6  0.000000000000009  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  28.34 
 
 
355 aa  81.6  0.000000000000009  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  25.23 
 
 
236 aa  81.6  0.000000000000009  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  25.49 
 
 
231 aa  81.3  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  26.87 
 
 
227 aa  81.3  0.00000000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_2132  Crp/FNR family transcriptional regulator  26.87 
 
 
226 aa  81.6  0.00000000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A2279  transcriptional regulator, Crp/Fnr family  26.8 
 
 
230 aa  81.3  0.00000000000001  Bacillus cereus AH187  Bacteria  normal  0.216294  n/a   
 
 
-
 
NC_011725  BCB4264_A2139  transcriptional regulator, Crp/Fnr family  26.37 
 
 
230 aa  81.3  0.00000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  25.37 
 
 
229 aa  80.1  0.00000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_2102  CRP/FNR family transcriptional regulator  25.48 
 
 
227 aa  80.9  0.00000000000002  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  22.87 
 
 
225 aa  80.1  0.00000000000002  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_007516  Syncc9605_0269  Crp/FNR family transcriptional regulator  26.84 
 
 
238 aa  79.7  0.00000000000003  Synechococcus sp. CC9605  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_1708  transcriptional regulator, Crp/Fnr family  27.91 
 
 
229 aa  80.1  0.00000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  28.95 
 
 
236 aa  80.1  0.00000000000003  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_010338  Caul_0629  transcriptional regulator FixK  27.51 
 
 
215 aa  80.1  0.00000000000003  Caulobacter sp. K31  Bacteria  normal  0.595222  normal  0.236212 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>