Gene RPD_1005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1005 
Symbol 
ID4021480 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1138441 
End bp1139121 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content66% 
IMG OID637961196 
Productcyclic nucleotide-binding 
Protein accessionYP_568144 
Protein GI91975485 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.184599 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.14907 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTACGC AGGCAGAGTT CGCGGTGATC CTGAAGATGA ATCCGTTGTT CGCCGATCTC 
GGTTCCGAGG AACTGCAGCG GATCGCCGGG CTGTGCCACA CCCAACAGCT CAATGCCGGC
GAGATGCTGT TCCAGAAGGG CGACGAGGGC GGTGCGCTGT TCGGCGTTCG ACGCGGCCAG
ATCCGGATCG AGACCGGCGC GTCTGATGGC AGTCGGCTGA CTCTCAATTT CCTCGGCCCC
GGCGATCTGT TCGGCGAAGT CGCGGTTCTC GACGGCCAGA GCCGCACCGC CGACGCCACC
GCCGGAGAGC CGACCGAATT GTTCGTGCTG CGGCGTGAGG ACTTCCTCGG CCATCTCGAA
CGCGAGCCGA CCGTCGCGGT CAAGCTGATT GCGCTGCTGT GCCAGCGGAT ACGCTGGATG
AGCGAGCGGA TGGAGGAGTC GGTCCTGCAG CCGCTGCCGG TGCGACTGGC GCGTCGGCTG
TGCGCGCTGG CGGCCGATTT CGGCGCGGAG GTGCATATCT CGCAGGAGCA ACTCGGCGTG
TTTGTCGGCG CCGCGCGCGA GAGCGTCAAC CGTCAGCTCC AGAGCTGGCG CAAGGACGGC
ATCCTCGATT TGCACCGCGG CCGTATCATG CTCAAGAACA TGGGTCGCCT CACGGCTGTC
GCCCGCAATC AGGAGCGGTG A
 
Protein sequence
MSTQAEFAVI LKMNPLFADL GSEELQRIAG LCHTQQLNAG EMLFQKGDEG GALFGVRRGQ 
IRIETGASDG SRLTLNFLGP GDLFGEVAVL DGQSRTADAT AGEPTELFVL RREDFLGHLE
REPTVAVKLI ALLCQRIRWM SERMEESVLQ PLPVRLARRL CALAADFGAE VHISQEQLGV
FVGAARESVN RQLQSWRKDG ILDLHRGRIM LKNMGRLTAV ARNQER