More than 300 homologs were found in PanDaTox collection
for query gene Cpin_0678 on replicon NC_013132
Organism: Chitinophaga pinensis DSM 2588



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  100 
 
 
236 aa  485  1e-136  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  40.89 
 
 
226 aa  162  5.0000000000000005e-39  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  35.35 
 
 
227 aa  157  1e-37  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  36.63 
 
 
355 aa  144  2e-33  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_013132  Cpin_2386  transcriptional regulator, Crp/Fnr family  37.17 
 
 
230 aa  140  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0267635  normal  0.395563 
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  38.46 
 
 
237 aa  141  9.999999999999999e-33  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  37.57 
 
 
350 aa  138  6e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_002950  PG0396  Crp/FNR family transcriptional regulator  39.27 
 
 
232 aa  137  1e-31  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  35.42 
 
 
354 aa  136  2e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_009441  Fjoh_4632  CRP/FNR family transcriptional regulator  39.57 
 
 
234 aa  135  4e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  33.48 
 
 
248 aa  135  6.0000000000000005e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  35.78 
 
 
348 aa  133  3e-30  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  37.5 
 
 
352 aa  130  2.0000000000000002e-29  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  33.68 
 
 
352 aa  129  6e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  34.62 
 
 
226 aa  123  3e-27  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  32.68 
 
 
225 aa  120  1.9999999999999998e-26  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  33.66 
 
 
225 aa  119  3.9999999999999996e-26  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  32.26 
 
 
227 aa  117  9.999999999999999e-26  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  31.84 
 
 
226 aa  117  1.9999999999999998e-25  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  34.36 
 
 
225 aa  112  4.0000000000000004e-24  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  28.08 
 
 
226 aa  112  4.0000000000000004e-24  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  31.25 
 
 
231 aa  110  2.0000000000000002e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  36.65 
 
 
217 aa  110  2.0000000000000002e-23  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  28.57 
 
 
227 aa  110  2.0000000000000002e-23  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  34.59 
 
 
239 aa  109  3e-23  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008009  Acid345_3455  Crp/FNR family transcriptional regulator  31.36 
 
 
237 aa  109  5e-23  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.063385 
 
 
-
 
NC_013411  GYMC61_1592  transcriptional regulator, Crp/Fnr family  34.92 
 
 
228 aa  107  1e-22  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.68 
 
 
229 aa  107  2e-22  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  31.73 
 
 
228 aa  106  3e-22  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  30.54 
 
 
234 aa  105  8e-22  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  30.29 
 
 
226 aa  104  9e-22  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  31.82 
 
 
236 aa  103  2e-21  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_008009  Acid345_1498  Crp/FNR family transcriptional regulator  30.13 
 
 
239 aa  103  2e-21  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.163113  normal 
 
 
-
 
NC_013216  Dtox_2928  transcriptional regulator, Crp/Fnr family  30.92 
 
 
232 aa  103  3e-21  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.39759 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  28.7 
 
 
251 aa  103  3e-21  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  28.7 
 
 
251 aa  103  3e-21  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  28.7 
 
 
251 aa  103  3e-21  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  28.95 
 
 
244 aa  103  3e-21  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  28.7 
 
 
251 aa  103  3e-21  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  31.47 
 
 
224 aa  103  3e-21  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  28.7 
 
 
251 aa  103  3e-21  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  28.7 
 
 
251 aa  103  3e-21  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  29.02 
 
 
248 aa  102  5e-21  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0324  Crp/FNR family transcriptional regulator  30.93 
 
 
226 aa  102  6e-21  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.105795  normal 
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  28.11 
 
 
241 aa  101  9e-21  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  28.26 
 
 
251 aa  101  9e-21  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  28.29 
 
 
227 aa  101  1e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  28.88 
 
 
630 aa  101  1e-20  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  29.02 
 
 
249 aa  101  1e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  31.77 
 
 
257 aa  100  1e-20  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.61 
 
 
228 aa  100  1e-20  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  28.57 
 
 
248 aa  100  2e-20  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_1955  transcriptional regulator, Crp/Fnr family  31.34 
 
 
229 aa  100  2e-20  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  27.39 
 
 
244 aa  100  3e-20  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  27.39 
 
 
244 aa  100  3e-20  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  27.39 
 
 
244 aa  100  3e-20  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  30.32 
 
 
244 aa  99.4  4e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_007517  Gmet_0092  Crp/FNR family transcriptional regulator  27.65 
 
 
230 aa  99.4  4e-20  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000000552774  hitchhiker  0.0000198015 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  32.16 
 
 
260 aa  99.4  4e-20  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0292  CRP/FNR family transcriptional regulator  30.93 
 
 
224 aa  99.8  4e-20  Roseiflexus sp. RS-1  Bacteria  normal  0.210312  normal  0.0189188 
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  28.57 
 
 
249 aa  99.8  4e-20  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  27.67 
 
 
236 aa  99.4  5e-20  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  28.51 
 
 
244 aa  99.4  5e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  31.41 
 
 
228 aa  99  5e-20  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  29.86 
 
 
232 aa  99  6e-20  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  29.77 
 
 
225 aa  99  6e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  32.16 
 
 
242 aa  98.6  7e-20  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  32.16 
 
 
260 aa  98.6  7e-20  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  32.16 
 
 
260 aa  98.6  7e-20  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  32.16 
 
 
260 aa  98.6  7e-20  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  31.22 
 
 
248 aa  98.6  7e-20  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  32.16 
 
 
260 aa  98.6  7e-20  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  27.78 
 
 
244 aa  98.6  7e-20  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  29.02 
 
 
248 aa  98.6  7e-20  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  32.16 
 
 
242 aa  98.6  7e-20  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  29.07 
 
 
403 aa  98.6  7e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  29.79 
 
 
244 aa  97.8  1e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  27.8 
 
 
244 aa  97.4  1e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1944  transcriptional regulator, Crp/Fnr family  28.35 
 
 
227 aa  97.8  1e-19  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  28.12 
 
 
248 aa  97.8  1e-19  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0252  Crp/FNR family transcriptional regulator  29.9 
 
 
218 aa  97.8  1e-19  Roseiflexus castenholzii DSM 13941  Bacteria  unclonable  0.00000185636  normal  0.131428 
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  28.12 
 
 
248 aa  97.8  1e-19  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  29.84 
 
 
228 aa  97.1  2e-19  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  26.96 
 
 
242 aa  97.1  2e-19  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  31.02 
 
 
226 aa  97.4  2e-19  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  30.48 
 
 
244 aa  97.4  2e-19  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  26.56 
 
 
247 aa  97.4  2e-19  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  30.48 
 
 
244 aa  97.4  2e-19  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  28.72 
 
 
235 aa  97.1  2e-19  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_008609  Ppro_2600  Crp/FNR family transcriptional regulator  30.41 
 
 
229 aa  97.1  2e-19  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0103419  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  29.74 
 
 
222 aa  96.7  3e-19  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  29.89 
 
 
230 aa  96.7  3e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  26.81 
 
 
266 aa  96.3  4e-19  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  27.27 
 
 
262 aa  96.3  4e-19  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  31.44 
 
 
254 aa  95.5  6e-19  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  24.54 
 
 
231 aa  95.5  6e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3176  transcriptional regulator, Crp/Fnr family  30.6 
 
 
230 aa  95.5  6e-19  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  30.77 
 
 
236 aa  95.5  6e-19  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  26.7 
 
 
229 aa  95.5  6e-19  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  28.21 
 
 
235 aa  95.5  6e-19  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
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