More than 300 homologs were found in PanDaTox collection
for query gene Psyr_3425 on replicon NC_007005
Organism: Pseudomonas syringae pv. syringae B728a



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007005  Psyr_3425  cyclic nucleotide-binding: regulatory protein, Crp  100 
 
 
244 aa  500  1e-141  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.0533041 
 
 
-
 
NC_004578  PSPTO_1991  transcriptional activator Anr  95.9 
 
 
244 aa  483  1e-135  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.695719  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  90.12 
 
 
244 aa  459  9.999999999999999e-129  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4265  transcriptional regulator Anr  88.93 
 
 
244 aa  454  1e-127  Pseudomonas putida KT2440  Bacteria  normal  0.880812  normal 
 
 
-
 
NC_010322  PputGB1_3830  Crp/FNR family transcriptional regulator  88.93 
 
 
244 aa  453  1e-127  Pseudomonas putida GB-1  Bacteria  normal  normal  0.525453 
 
 
-
 
NC_010501  PputW619_3583  Crp/FNR family transcriptional regulator  89.75 
 
 
244 aa  457  1e-127  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1603  CRP/FNR family transcriptional regulator  88.93 
 
 
244 aa  454  1e-127  Pseudomonas putida F1  Bacteria  normal  normal  0.138297 
 
 
-
 
NC_009439  Pmen_2615  CRP/FNR family transcriptional regulator  85.19 
 
 
244 aa  440  1e-123  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00240538  normal  0.855877 
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  86.42 
 
 
244 aa  437  9.999999999999999e-123  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  86.42 
 
 
244 aa  437  9.999999999999999e-123  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  78.69 
 
 
244 aa  408  1e-113  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  64.1 
 
 
253 aa  328  6e-89  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  51.84 
 
 
250 aa  277  1e-73  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  52.07 
 
 
248 aa  275  7e-73  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  52.08 
 
 
248 aa  274  9e-73  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  53.51 
 
 
250 aa  270  2e-71  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  53.51 
 
 
250 aa  270  2e-71  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  52.19 
 
 
249 aa  270  2e-71  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  53.51 
 
 
250 aa  270  2e-71  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  53.51 
 
 
250 aa  270  2e-71  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  53.51 
 
 
250 aa  270  2e-71  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  52.63 
 
 
249 aa  269  2.9999999999999997e-71  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  52.19 
 
 
250 aa  269  2.9999999999999997e-71  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
254 aa  268  4e-71  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  268  5e-71  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  268  8e-71  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  268  8e-71  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  268  8e-71  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  268  8e-71  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  268  8e-71  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  51.32 
 
 
250 aa  268  8e-71  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  51.32 
 
 
252 aa  268  8e-71  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
250 aa  267  1e-70  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
254 aa  267  1e-70  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
250 aa  267  1e-70  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
250 aa  267  1e-70  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  52.63 
 
 
250 aa  267  1e-70  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  52.19 
 
 
249 aa  266  2e-70  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  52.63 
 
 
250 aa  266  2.9999999999999995e-70  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
250 aa  266  2.9999999999999995e-70  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  52.65 
 
 
250 aa  265  5e-70  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  265  5e-70  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  53.1 
 
 
250 aa  265  7e-70  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_013421  Pecwa_2398  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
248 aa  264  8e-70  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  53.07 
 
 
248 aa  264  8e-70  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  264  8.999999999999999e-70  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_008309  HS_0878  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
257 aa  264  8.999999999999999e-70  Haemophilus somnus 129PT  Bacteria  normal  0.0364978  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  263  1e-69  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  52.65 
 
 
250 aa  263  1e-69  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  49.14 
 
 
249 aa  261  4.999999999999999e-69  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  50 
 
 
250 aa  258  7e-68  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_003910  CPS_1987  fumarate/nitrate reduction transcriptional regulator  49.33 
 
 
239 aa  256  2e-67  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  51.56 
 
 
254 aa  253  3e-66  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  48.1 
 
 
244 aa  245  4.9999999999999997e-64  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  50.22 
 
 
262 aa  244  9.999999999999999e-64  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0876  Crp/FNR family transcriptional regulator  48.7 
 
 
253 aa  229  2e-59  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.0000121732  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  47.16 
 
 
243 aa  224  1e-57  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  48.02 
 
 
222 aa  219  1.9999999999999999e-56  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_008740  Maqu_2378  CRP/FNR family transcriptional regulator  49.57 
 
 
248 aa  217  1e-55  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  44.44 
 
 
246 aa  209  3e-53  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  45.29 
 
 
247 aa  207  2e-52  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  43.84 
 
 
260 aa  206  2e-52  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  42.79 
 
 
266 aa  206  3e-52  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  43.98 
 
 
232 aa  201  8e-51  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  41.33 
 
 
259 aa  200  9.999999999999999e-51  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  41.33 
 
 
259 aa  200  9.999999999999999e-51  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  41.33 
 
 
259 aa  200  9.999999999999999e-51  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  43.17 
 
 
245 aa  197  1.0000000000000001e-49  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  45.38 
 
 
269 aa  196  2.0000000000000003e-49  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  40.79 
 
 
257 aa  196  2.0000000000000003e-49  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  42.48 
 
 
257 aa  197  2.0000000000000003e-49  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  42.13 
 
 
263 aa  196  3e-49  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  43.06 
 
 
232 aa  196  3e-49  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  41.23 
 
 
257 aa  196  3e-49  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  41.82 
 
 
262 aa  196  3e-49  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  40.79 
 
 
257 aa  195  6e-49  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  40.79 
 
 
257 aa  195  7e-49  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_012856  Rpic12D_1204  transcriptional regulator, Crp/Fnr family  43.06 
 
 
242 aa  194  9e-49  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1283  putative fumarate and nitrate reduction regulatory transcription regulator protein  42.17 
 
 
242 aa  194  1e-48  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0516193  normal  0.32826 
 
 
-
 
NC_010682  Rpic_1111  transcriptional regulator, Crp/Fnr family  42.66 
 
 
242 aa  194  1e-48  Ralstonia pickettii 12J  Bacteria  normal  0.700786  normal  0.531022 
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  43.06 
 
 
274 aa  194  1e-48  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  193  2e-48  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  193  2e-48  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  43.78 
 
 
272 aa  193  2e-48  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  193  2e-48  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  193  2e-48  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  193  2e-48  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  40.37 
 
 
251 aa  193  2e-48  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  40.37 
 
 
248 aa  192  3e-48  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  41.01 
 
 
239 aa  192  3e-48  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  40.37 
 
 
251 aa  192  3e-48  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  41.01 
 
 
249 aa  192  3e-48  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  41.01 
 
 
249 aa  192  5e-48  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  40.37 
 
 
630 aa  191  7e-48  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  40.09 
 
 
248 aa  191  7e-48  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
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