More than 300 homologs were found in PanDaTox collection
for query gene PG0396 on replicon NC_002950
Organism: Porphyromonas gingivalis W83



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002950  PG0396  Crp/FNR family transcriptional regulator  100 
 
 
232 aa  477  1e-134  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  39.27 
 
 
236 aa  137  1e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  31.07 
 
 
227 aa  114  1.0000000000000001e-24  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  30.53 
 
 
354 aa  111  1.0000000000000001e-23  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  31.51 
 
 
226 aa  109  5e-23  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  29.13 
 
 
355 aa  105  8e-22  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  29.77 
 
 
225 aa  100  2e-20  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  28.84 
 
 
225 aa  97.4  2e-19  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  29.77 
 
 
226 aa  95.9  4e-19  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_013169  Ksed_25400  cAMP-binding protein  30.05 
 
 
225 aa  93.6  2e-18  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2386  transcriptional regulator, Crp/Fnr family  29.38 
 
 
230 aa  92.8  4e-18  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0267635  normal  0.395563 
 
 
-
 
NC_008699  Noca_0339  cyclic nucleotide-binding  29.77 
 
 
225 aa  92  7e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  27.96 
 
 
228 aa  91.3  1e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014211  Ndas_5315  transcriptional regulator, Crp/Fnr family  27.91 
 
 
228 aa  90.1  2e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.527594 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.33 
 
 
225 aa  90.1  2e-17  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.91 
 
 
226 aa  90.1  3e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  31.25 
 
 
237 aa  90.1  3e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_013132  Cpin_4234  transcriptional regulator, Crp/Fnr family  27.54 
 
 
248 aa  89.7  4e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  31.74 
 
 
348 aa  89.7  4e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  28.95 
 
 
352 aa  89.4  5e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  28.88 
 
 
352 aa  87.8  1e-16  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.37 
 
 
226 aa  87.4  2e-16  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_014151  Cfla_3095  transcriptional regulator, Crp/Fnr family  27.49 
 
 
220 aa  87.4  2e-16  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.0000148221 
 
 
-
 
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  26.63 
 
 
350 aa  86.7  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.98 
 
 
228 aa  85.9  4e-16  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1066  transcriptional regulator, Crp/Fnr family  27.83 
 
 
225 aa  85.5  6e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  27.49 
 
 
225 aa  85.5  6e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_009441  Fjoh_4632  CRP/FNR family transcriptional regulator  28.5 
 
 
234 aa  85.1  8e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1995  transcriptional regulator  26.98 
 
 
224 aa  85.1  8e-16  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  27.91 
 
 
226 aa  84.7  0.000000000000001  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  27.01 
 
 
224 aa  84.7  0.000000000000001  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  29.47 
 
 
225 aa  84.3  0.000000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0257  transcriptional regulator NnrR  26.56 
 
 
232 aa  83.6  0.000000000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  29.38 
 
 
239 aa  83.6  0.000000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_013172  Bfae_26230  cAMP-binding protein  25.12 
 
 
225 aa  83.6  0.000000000000002  Brachybacterium faecium DSM 4810  Bacteria  normal  0.466611  n/a   
 
 
-
 
NC_013526  Tter_2020  transcriptional regulator, Crp/Fnr family  33.03 
 
 
239 aa  83.6  0.000000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0424227  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.74 
 
 
242 aa  82  0.000000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_013441  Gbro_0505  cyclic nucleotide-binding protein  28.57 
 
 
224 aa  82  0.000000000000008  Gordonia bronchialis DSM 43247  Bacteria  normal  0.287437  n/a   
 
 
-
 
NC_008726  Mvan_5435  CRP/FNR family transcriptional regulator  29.06 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.397858 
 
 
-
 
NC_008146  Mmcs_4818  Crp/FNR family transcriptional regulator  29.06 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4904  Crp/FNR family transcriptional regulator  29.06 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.385516 
 
 
-
 
NC_009077  Mjls_5205  Crp/FNR family transcriptional regulator  29.06 
 
 
224 aa  81.6  0.00000000000001  Mycobacterium sp. JLS  Bacteria  normal  0.703662  hitchhiker  0.000819508 
 
 
-
 
NC_011899  Hore_09760  putative transcriptional regulator, Crp/Fnr family  23.7 
 
 
226 aa  80.1  0.00000000000003  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_13707  Cpr/FNR family transcriptional regulator  28.08 
 
 
224 aa  79.3  0.00000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0333343 
 
 
-
 
NC_009338  Mflv_1371  CRP/FNR family transcriptional regulator  28.57 
 
 
224 aa  79  0.00000000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0955358 
 
 
-
 
NC_004311  BRA0281  transcriptional regulator NnrR  25.52 
 
 
232 aa  77.8  0.0000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_3932  transcriptional regulator, Crp/Fnr family  27.32 
 
 
224 aa  78.2  0.0000000000001  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.571672  n/a   
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  27.78 
 
 
235 aa  77.8  0.0000000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.35 
 
 
225 aa  77.4  0.0000000000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009428  Rsph17025_0968  CRP/FNR family transcriptional regulator  27.14 
 
 
233 aa  77.4  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_2039  CRP/FNR family transcriptional regulator  29.47 
 
 
226 aa  77.4  0.0000000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3114  CRP/FNR family transcriptional regulator  25.6 
 
 
232 aa  76.6  0.0000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  27.46 
 
 
227 aa  76.3  0.0000000000004  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.05 
 
 
231 aa  75.9  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_007493  RSP_0327  Crp/FNR family transcriptional regulator  26.87 
 
 
233 aa  75.9  0.0000000000005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.539351  n/a   
 
 
-
 
NC_009049  Rsph17029_1972  CRP/FNR family transcriptional regulator  26.87 
 
 
233 aa  75.9  0.0000000000005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1633  transcriptional regulator, Crp/Fnr family  25 
 
 
226 aa  75.5  0.0000000000007  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.391452  normal  0.0281193 
 
 
-
 
NC_011883  Ddes_1827  transcriptional regulator, Crp/Fnr family  27.84 
 
 
229 aa  75.1  0.0000000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  25.93 
 
 
226 aa  75.1  0.0000000000009  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_009380  Strop_4322  cyclic nucleotide-binding  30.09 
 
 
225 aa  75.1  0.0000000000009  Salinispora tropica CNB-440  Bacteria  normal  normal  0.0230513 
 
 
-
 
NC_009953  Sare_4762  Crp/FNR family transcriptional regulator  29.63 
 
 
225 aa  74.7  0.000000000001  Salinispora arenicola CNS-205  Bacteria  normal  0.900483  hitchhiker  0.0000929699 
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  26.07 
 
 
222 aa  74.3  0.000000000001  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  27.32 
 
 
241 aa  74.3  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2034  transcriptional regulator, Crp/Fnr family  25.12 
 
 
243 aa  73.6  0.000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.663242  normal  0.0439569 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  25.91 
 
 
248 aa  73.9  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  25.91 
 
 
248 aa  74.3  0.000000000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  25.91 
 
 
248 aa  74.3  0.000000000002  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_013721  HMPREF0424_0303  cyclic nucleotide-binding domain protein  28.36 
 
 
236 aa  73.2  0.000000000003  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.232206 
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  27.49 
 
 
223 aa  72.8  0.000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2803  transcriptional regulator, Crp/Fnr family  29.38 
 
 
229 aa  72.8  0.000000000004  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_05940  putative transcriptional regulator, Crp/Fnr family  23.71 
 
 
231 aa  72.8  0.000000000004  Halothermothrix orenii H 168  Bacteria  normal  0.558941  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  24.41 
 
 
223 aa  72.8  0.000000000004  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  27.91 
 
 
236 aa  72  0.000000000007  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  26.13 
 
 
236 aa  72  0.000000000007  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  27.72 
 
 
228 aa  71.6  0.00000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  25.93 
 
 
240 aa  71.2  0.00000000001  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  27.22 
 
 
236 aa  71.2  0.00000000001  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  25.68 
 
 
236 aa  70.9  0.00000000001  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  29.32 
 
 
228 aa  71.6  0.00000000001  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  26.49 
 
 
261 aa  71.2  0.00000000001  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  24.35 
 
 
231 aa  70.5  0.00000000002  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  25.87 
 
 
239 aa  70.5  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  27.18 
 
 
262 aa  70.9  0.00000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  25.52 
 
 
229 aa  70.9  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  31.32 
 
 
224 aa  70.9  0.00000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  24.35 
 
 
231 aa  70.5  0.00000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2074  transcriptional regulator, Crp/Fnr family  28.5 
 
 
225 aa  70.9  0.00000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.971908 
 
 
-
 
NC_013235  Namu_0718  transcriptional regulator, Crp/Fnr family  26.96 
 
 
224 aa  70.9  0.00000000002  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  25.13 
 
 
231 aa  70.9  0.00000000002  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_010424  Daud_0783  CRP/FNR family transcriptional regulator  28.1 
 
 
217 aa  70.1  0.00000000003  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  24.87 
 
 
248 aa  70.1  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0824  Crp/FNR family transcriptional regulator  26.98 
 
 
225 aa  70.1  0.00000000003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0928817  normal  0.0486748 
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  24.6 
 
 
249 aa  70.1  0.00000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  23.71 
 
 
251 aa  69.7  0.00000000004  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_2444  Crp/FNR family transcriptional regulator  23.62 
 
 
238 aa  69.7  0.00000000004  Pelobacter propionicus DSM 2379  Bacteria  decreased coverage  0.000577484  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>