More than 300 homologs were found in PanDaTox collection
for query gene Bphyt_6315 on replicon NC_010676
Organism: Burkholderia phytofirmans PsJN



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  100 
 
 
403 aa  820    Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  69.26 
 
 
260 aa  342  5e-93  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0129  Crp/FNR family transcriptional regulator  64.96 
 
 
259 aa  340  2e-92  Burkholderia pseudomallei 1710b  Bacteria  normal  0.300797  n/a   
 
 
-
 
NC_009075  BURPS668_A1636  Crp/FNR family transcriptional regulator  64.96 
 
 
259 aa  340  2e-92  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1554  Crp/FNR family transcriptional regulator  64.96 
 
 
259 aa  340  2e-92  Burkholderia pseudomallei 1106a  Bacteria  normal  0.796955  n/a   
 
 
-
 
NC_007650  BTH_II1244  Crp/FNR family transcriptional regulator  63.39 
 
 
261 aa  333  4e-90  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  61.83 
 
 
266 aa  333  4e-90  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  66.23 
 
 
260 aa  332  7.000000000000001e-90  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  65.8 
 
 
260 aa  325  6e-88  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  65.8 
 
 
260 aa  325  6e-88  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  65.8 
 
 
260 aa  325  6e-88  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  65.8 
 
 
260 aa  325  6e-88  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_008391  Bamb_3812  Crp/FNR family transcriptional regulator  65.24 
 
 
257 aa  325  9e-88  Burkholderia ambifaria AMMD  Bacteria  normal  0.279241  normal  0.577974 
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  65.8 
 
 
242 aa  325  1e-87  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  65.8 
 
 
242 aa  325  1e-87  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4265  Crp/FNR family transcriptional regulator  59.92 
 
 
259 aa  324  1e-87  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.367581  normal  0.892156 
 
 
-
 
NC_010552  BamMC406_4280  Crp/FNR family transcriptional regulator  64.81 
 
 
257 aa  324  2e-87  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.0900166 
 
 
-
 
NC_008543  Bcen2424_4355  Crp/FNR family transcriptional regulator  59.92 
 
 
259 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0811079  normal 
 
 
-
 
NC_008061  Bcen_4012  Crp/FNR family transcriptional regulator  59.92 
 
 
259 aa  320  1.9999999999999998e-86  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6195  Crp/FNR family transcriptional regulator  63.95 
 
 
257 aa  320  3e-86  Burkholderia ambifaria MC40-6  Bacteria  normal  0.107166  normal  0.295507 
 
 
-
 
NC_007511  Bcep18194_B1665  Crp/FNR family transcriptional regulator  59.69 
 
 
259 aa  318  1e-85  Burkholderia sp. 383  Bacteria  hitchhiker  0.00239618  normal  0.130389 
 
 
-
 
NC_010515  Bcenmc03_5999  Crp/FNR family transcriptional regulator  59.54 
 
 
259 aa  318  1e-85  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.582695  normal 
 
 
-
 
NC_010552  BamMC406_4238  Crp/FNR family transcriptional regulator  59.36 
 
 
257 aa  316  6e-85  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0460631  normal 
 
 
-
 
NC_010087  Bmul_5904  Crp/FNR family transcriptional regulator  61.34 
 
 
257 aa  314  1.9999999999999998e-84  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.379633  normal  0.222249 
 
 
-
 
NC_008391  Bamb_3764  Crp/FNR family transcriptional regulator  60.85 
 
 
259 aa  309  4e-83  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0549839 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  57.74 
 
 
267 aa  303  3.0000000000000004e-81  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_010676  Bphyt_4272  transcriptional regulator, Crp/Fnr family  58.26 
 
 
218 aa  283  4.0000000000000003e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  0.71016  normal  0.563993 
 
 
-
 
NC_010515  Bcenmc03_4486  Crp/FNR family transcriptional regulator  52.8 
 
 
248 aa  283  4.0000000000000003e-75  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B3138  Crp/FNR family transcriptional regulator  53.36 
 
 
248 aa  282  6.000000000000001e-75  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_5297  Crp/FNR family transcriptional regulator  52.4 
 
 
248 aa  281  1e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  56.9 
 
 
261 aa  280  3e-74  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  56.9 
 
 
261 aa  280  3e-74  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5737  Crp/FNR family transcriptional regulator  53.2 
 
 
248 aa  280  3e-74  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.188641 
 
 
-
 
NC_008061  Bcen_5122  Crp/FNR family transcriptional regulator  53.2 
 
 
248 aa  280  3e-74  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3149  Crp/FNR family transcriptional regulator  52.4 
 
 
249 aa  277  3e-73  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  57.34 
 
 
224 aa  277  3e-73  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0035  Crp/FNR family transcriptional regulator  54.89 
 
 
251 aa  276  6e-73  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5008  Crp/FNR family transcriptional regulator  53.2 
 
 
249 aa  275  1.0000000000000001e-72  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0031  Crp/FNR family transcriptional regulator  54.47 
 
 
251 aa  274  2.0000000000000002e-72  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1540  Crp/FNR family transcriptional regulator  54.82 
 
 
630 aa  274  2.0000000000000002e-72  Burkholderia pseudomallei 1710b  Bacteria  normal  0.18142  n/a   
 
 
-
 
NC_008835  BMA10229_1464  Crp/FNR family transcriptional regulator  54.47 
 
 
251 aa  274  2.0000000000000002e-72  Burkholderia mallei NCTC 10229  Bacteria  normal  0.855917  n/a   
 
 
-
 
NC_008784  BMASAVP1_1184  Crp/FNR family transcriptional regulator  54.47 
 
 
251 aa  274  2.0000000000000002e-72  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0037  Crp/FNR family transcriptional regulator  54.47 
 
 
251 aa  274  2.0000000000000002e-72  Burkholderia mallei NCTC 10247  Bacteria  normal  0.284481  n/a   
 
 
-
 
NC_009075  BURPS668_A0051  cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases  54.47 
 
 
251 aa  273  4.0000000000000004e-72  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A0037  Crp/FNR family transcriptional regulator  54.47 
 
 
251 aa  273  4.0000000000000004e-72  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1047  cyclic nucleotide-binding: regulatory protein, Crp  54.04 
 
 
247 aa  270  2.9999999999999997e-71  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2782  Crp/FNR family transcriptional regulator  53.33 
 
 
262 aa  263  4.999999999999999e-69  Delftia acidovorans SPH-1  Bacteria  normal  0.0680307  normal  0.414614 
 
 
-
 
NC_010524  Lcho_2772  Crp/FNR family transcriptional regulator  53.12 
 
 
245 aa  262  1e-68  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00275745 
 
 
-
 
NC_011662  Tmz1t_1288  transcriptional regulator, Crp/Fnr family  54.13 
 
 
246 aa  258  1e-67  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_1530  Crp/FNR family transcriptional regulator  52 
 
 
239 aa  258  1e-67  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1007  transcriptional regulator, Crp/Fnr family  52.44 
 
 
242 aa  255  8e-67  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4521  Crp/Fnr family transcriptional regulator  52.81 
 
 
257 aa  255  8e-67  Cupriavidus metallidurans CH34  Bacteria  normal  0.0161618  normal  0.0108643 
 
 
-
 
NC_008782  Ajs_1091  CRP/FNR family transcriptional regulator  52.44 
 
 
247 aa  255  1.0000000000000001e-66  Acidovorax sp. JS42  Bacteria  normal  0.140321  normal 
 
 
-
 
NC_008781  Pnap_3775  CRP/FNR family transcriptional regulator  52.04 
 
 
265 aa  253  4.0000000000000004e-66  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1163  CRP/FNR family transcriptional regulator  51.56 
 
 
251 aa  249  5e-65  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2510  transcriptional regulator, Crp/Fnr family  54.75 
 
 
274 aa  247  3e-64  Ralstonia pickettii 12J  Bacteria  normal  normal  0.6173 
 
 
-
 
NC_010678  Rpic_4428  transcriptional regulator, Crp/Fnr family  50.44 
 
 
263 aa  246  4e-64  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4561  transcriptional regulator, Crp/Fnr family  50.44 
 
 
263 aa  246  4e-64  Ralstonia pickettii 12D  Bacteria  normal  normal  0.291712 
 
 
-
 
NC_007948  Bpro_1207  Crp/FNR family transcriptional regulator  51.97 
 
 
264 aa  245  9.999999999999999e-64  Polaromonas sp. JS666  Bacteria  normal  0.494469  normal 
 
 
-
 
NC_003295  RSc0190  transcription regulator protein  49.33 
 
 
266 aa  243  3e-63  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.180711 
 
 
-
 
NC_008825  Mpe_A2471  transcription factor Fnr  53.12 
 
 
269 aa  243  3.9999999999999997e-63  Methylibium petroleiphilum PM1  Bacteria  normal  0.366844  normal  0.0435693 
 
 
-
 
NC_007908  Rfer_1937  Crp/FNR family transcriptional regulator  52.86 
 
 
223 aa  241  2e-62  Rhodoferax ferrireducens T118  Bacteria  normal  0.155753  n/a   
 
 
-
 
NC_007948  Bpro_1170  Crp/FNR family transcriptional regulator  44.95 
 
 
274 aa  240  2.9999999999999997e-62  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4294  Crp/FNR family transcriptional regulator  47.17 
 
 
272 aa  239  8e-62  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0792  CRP/FNR family transcriptional regulator  46.25 
 
 
262 aa  229  7e-59  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.328451  normal 
 
 
-
 
NC_007492  Pfl01_3345  Crp/FNR family transcriptional regulator  49.54 
 
 
247 aa  227  2e-58  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.797997  normal 
 
 
-
 
NC_007347  Reut_A2034  cyclic nucleotide-binding: regulatory protein, Crp  44.44 
 
 
232 aa  212  9e-54  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  43.5 
 
 
232 aa  211  1e-53  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  43.95 
 
 
256 aa  211  2e-53  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  44.14 
 
 
250 aa  209  5e-53  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  40.17 
 
 
250 aa  209  8e-53  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  43.84 
 
 
256 aa  208  1e-52  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  40.59 
 
 
250 aa  208  1e-52  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  40.59 
 
 
250 aa  208  1e-52  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  41.38 
 
 
250 aa  207  4e-52  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  41.38 
 
 
250 aa  207  4e-52  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  41.38 
 
 
250 aa  207  4e-52  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  41.38 
 
 
250 aa  207  4e-52  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  41.38 
 
 
250 aa  207  4e-52  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  40.17 
 
 
250 aa  206  4e-52  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  41.7 
 
 
252 aa  204  2e-51  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  40.68 
 
 
254 aa  203  5e-51  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_010501  PputW619_3034  Crp/FNR family transcriptional regulator  41.52 
 
 
269 aa  203  5e-51  Pseudomonas putida W619  Bacteria  normal  0.369454  normal 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  41.59 
 
 
250 aa  202  7e-51  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
250 aa  202  7e-51  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0212  putative transcriptional regulator, Crp/Fnr family  45.21 
 
 
254 aa  202  9.999999999999999e-51  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_008340  Mlg_0319  Crp/FNR family transcriptional regulator  42.41 
 
 
262 aa  201  1.9999999999999998e-50  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  42.15 
 
 
250 aa  201  1.9999999999999998e-50  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  41.59 
 
 
249 aa  200  3e-50  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_008709  Ping_0931  fumarate/nitrate reduction transcriptional regulator  39.47 
 
 
249 aa  200  3e-50  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.896198 
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  40.27 
 
 
248 aa  198  1.0000000000000001e-49  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
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