Gene HMPREF0424_0303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0303 
Symbol 
ID8709788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp329259 
End bp329969 
Gene Length711 bp 
Protein Length236 aa 
Translation table11 
GC content42% 
IMG OID646482421 
Productcyclic nucleotide-binding domain protein 
Protein accessionYP_003373558 
Protein GI283782804 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.232206 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAACAC TCAACGTTGA CAGCGATGAA TTTTCACTGC AACATACCGC ATTGTTTAAG 
CAAGTTCCAG CTGATCAAGT AAAAGAATTG ATGCAGTATT TACAAGAATC AACATTTAAA
AAAGGTTCTG CAATTTTTAA TGAAGGCGAT ACTGACCATC GAATGTACTT GCTTGAGCGA
GGAAGAGTAA AATTAGTTCG TCATTCAAAC GACAATCGTG TGCAATTGTT AAGTATTCAC
ACTCCTGGCG AAATTCTAGG CGAAATTCCC GTTTTTGACC CTAGCGGCGG TCCTCGTACA
GCTTCAGCAA TATCTATTAC CAACAATACT AGAGTTTTAT GGCTAGAAAA TGACGTGTTA
TTCCATTGGT TAAACAATCA CCCTAGTGTT GCAGTAGATA TGCTTCAGGT GCTTGCAGCG
CGCATGCGAG CAAATAATGA GCGAATTTCC GATTTAGTTT TTATGGATGT TCCTGCTCGT
TTAGCAAAGA CTTTGCTGAA TTTAGCTTCA AGATTTGGTG AGCCTATGAG CGATGGCTTG
CTTGTGCCGC ATGATTTAAC GCAAGAAGAG CTTGCGCAAC TTGTTGGCTC GTCACGCGAA
ACAGTTAACA AAGCGCTTAT GGATTTTGCA AACAGGGGTT GGATTATGCG CCAAGGCAGG
TCAATTATTA TCTACAAGCC TGGCATGCTT ATTCGTCGAG CTGAACGTTA A
 
Protein sequence
MATLNVDSDE FSLQHTALFK QVPADQVKEL MQYLQESTFK KGSAIFNEGD TDHRMYLLER 
GRVKLVRHSN DNRVQLLSIH TPGEILGEIP VFDPSGGPRT ASAISITNNT RVLWLENDVL
FHWLNNHPSV AVDMLQVLAA RMRANNERIS DLVFMDVPAR LAKTLLNLAS RFGEPMSDGL
LVPHDLTQEE LAQLVGSSRE TVNKALMDFA NRGWIMRQGR SIIIYKPGML IRRAER