More than 300 homologs were found in PanDaTox collection
for query gene Slin_1271 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_1271  transcriptional regulator, Crp/Fnr family  100 
 
 
350 aa  713    Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  64.39 
 
 
348 aa  455  1e-127  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_013132  Cpin_5556  transcriptional regulator, Crp/Fnr family  49.57 
 
 
352 aa  343  4e-93  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487576  normal  0.0420739 
 
 
-
 
NC_008255  CHU_1132  transcriptional regulator  46.02 
 
 
355 aa  318  1e-85  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.99008 
 
 
-
 
NC_013061  Phep_2492  response regulator receiver  45.64 
 
 
352 aa  314  9.999999999999999e-85  Pedobacter heparinus DSM 2366  Bacteria  normal  0.570528  normal  0.0101485 
 
 
-
 
NC_013037  Dfer_5316  transcriptional regulator, Crp/Fnr family  43.39 
 
 
354 aa  312  5.999999999999999e-84  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.100222 
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  56.83 
 
 
365 aa  157  4e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0648  diguanylate phosphodiesterase  46.67 
 
 
403 aa  150  5e-35  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.215101 
 
 
-
 
NC_014248  Aazo_0463  response regulator receiver modulated diguanylate phosphodiesterase  54.4 
 
 
403 aa  149  5e-35  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0649  response regulator receiver Signal transduction histidine kinase  48.57 
 
 
387 aa  145  1e-33  Anabaena variabilis ATCC 29413  Bacteria  normal  0.736737  normal  0.226718 
 
 
-
 
NC_011884  Cyan7425_0584  response regulator receiver protein  48.57 
 
 
216 aa  140  3e-32  Cyanothece sp. PCC 7425  Bacteria  normal  0.0767221  normal 
 
 
-
 
NC_013132  Cpin_0678  transcriptional regulator, Crp/Fnr family  37.57 
 
 
236 aa  138  1e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0236133  normal 
 
 
-
 
NC_011729  PCC7424_2022  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  57.85 
 
 
589 aa  138  2e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013730  Slin_1037  response regulator receiver protein  60.17 
 
 
247 aa  137  4e-31  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_0804  two component LuxR family transcriptional regulator  49.59 
 
 
204 aa  132  6e-30  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0065  response regulator receiver domain-containing protein  46.81 
 
 
196 aa  129  6e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.670969  normal  0.0252366 
 
 
-
 
NC_011729  PCC7424_2267  two component transcriptional regulator, AraC family  50.41 
 
 
265 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00808217 
 
 
-
 
NC_007413  Ava_4889  two component AraC family transcriptional regulator  44.83 
 
 
288 aa  119  9e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.298891  hitchhiker  0.00503781 
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  42.5 
 
 
394 aa  113  4.0000000000000004e-24  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  44.63 
 
 
236 aa  110  4.0000000000000004e-23  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  49.58 
 
 
234 aa  109  7.000000000000001e-23  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_014248  Aazo_3807  AraC family two component transcriptional regulator  43.94 
 
 
289 aa  109  8.000000000000001e-23  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  41.32 
 
 
310 aa  107  2e-22  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_008228  Patl_1836  two component AraC family transcriptional regulator  45 
 
 
1341 aa  106  6e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008010  Dgeo_2844  two component transcriptional regulator  46.28 
 
 
248 aa  106  7e-22  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_2199  response regulator receiver/SARP domain-containing protein  37.84 
 
 
344 aa  105  1e-21  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.425276 
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  31.08 
 
 
231 aa  104  3e-21  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  40.65 
 
 
216 aa  103  3e-21  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  40.65 
 
 
216 aa  103  3e-21  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_3628  two component LuxR family transcriptional regulator  38.97 
 
 
225 aa  103  5e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  0.717242  normal  0.142765 
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  45.38 
 
 
234 aa  103  5e-21  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  41.88 
 
 
1651 aa  103  5e-21  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  27.92 
 
 
231 aa  102  7e-21  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_010655  Amuc_1110  two component transcriptional regulator, winged helix family  44.63 
 
 
234 aa  102  7e-21  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_4323  two component LuxR family transcriptional regulator  36.64 
 
 
215 aa  103  7e-21  Trichodesmium erythraeum IMS101  Bacteria  normal  0.115662  normal  0.727411 
 
 
-
 
NC_009253  Dred_0707  two component transcriptional regulator  42.74 
 
 
232 aa  102  9e-21  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  48.08 
 
 
247 aa  102  1e-20  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_011830  Dhaf_1529  two component transcriptional regulator, winged helix family  40.41 
 
 
228 aa  102  1e-20  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0951  response regulator receiver protein  34.36 
 
 
239 aa  102  1e-20  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  unclonable  0.0000000111905  n/a   
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  43.22 
 
 
1180 aa  101  2e-20  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  41.32 
 
 
235 aa  101  2e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_4920  DNA-binding response regulator  40.44 
 
 
229 aa  101  2e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4447  CRP/FNR family transcriptional regulator  29.1 
 
 
227 aa  101  2e-20  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_4400  two component transcriptional regulator  41.91 
 
 
236 aa  101  2e-20  Marinomonas sp. MWYL1  Bacteria  normal  0.998417  normal 
 
 
-
 
NC_014248  Aazo_2887  LuxR family two component transcriptional regulator  38.24 
 
 
225 aa  101  2e-20  'Nostoc azollae' 0708  Bacteria  normal  0.526109  n/a   
 
 
-
 
NC_011658  BCAH187_A4803  DNA-binding response regulator  40.44 
 
 
229 aa  101  2e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2666  two component transcriptional regulator, AraC family  38.06 
 
 
251 aa  100  3e-20  Spirosoma linguale DSM 74  Bacteria  normal  0.21287  normal  0.224489 
 
 
-
 
NC_011773  BCAH820_4786  DNA-binding response regulator  40.44 
 
 
229 aa  100  3e-20  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4565  DNA-binding response regulator  39.71 
 
 
233 aa  100  5e-20  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4400  DNA-binding response regulator  39.71 
 
 
233 aa  100  5e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4417  DNA-binding response regulator  39.71 
 
 
233 aa  100  5e-20  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3179  DNA-binding response regulator VicR  46.96 
 
 
226 aa  100  6e-20  Bacillus cereus ATCC 10987  Bacteria  normal  0.0879082  n/a   
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  42.98 
 
 
236 aa  100  6e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_013526  Tter_2867  two component transcriptional regulator, winged helix family  40.3 
 
 
233 aa  99.8  6e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4781  DNA-binding response regulator  40.44 
 
 
229 aa  99.8  6e-20  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011655  BCAH187_C0255  DNA-binding response regulator  45.22 
 
 
226 aa  99.8  6e-20  Bacillus cereus AH187  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  42.98 
 
 
230 aa  99.8  6e-20  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  40.15 
 
 
228 aa  99.4  7e-20  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_1537  two component LuxR family transcriptional regulator  41.6 
 
 
242 aa  99.4  7e-20  Prochlorococcus marinus str. NATL2A  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  38.13 
 
 
230 aa  99.8  7e-20  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_010424  Daud_1419  two component transcriptional regulator  39.26 
 
 
231 aa  99.8  7e-20  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0720218  n/a   
 
 
-
 
NC_008819  NATL1_02441  two-component response regulator  41.6 
 
 
242 aa  99.8  7e-20  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.72299  normal 
 
 
-
 
NC_013730  Slin_2657  response regulator receiver protein  44.07 
 
 
128 aa  99.4  8e-20  Spirosoma linguale DSM 74  Bacteria  normal  0.0140925  normal  0.150861 
 
 
-
 
NC_008781  Pnap_0436  response regulator receiver protein  38.84 
 
 
370 aa  99.4  8e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0959  two component transcriptional regulator PhoB, winged helix family  38.67 
 
 
229 aa  98.6  1e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.159493 
 
 
-
 
NC_012560  Avin_48520  phosphate regulon response regulator; PhoB  41.54 
 
 
229 aa  98.6  1e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.0667889  n/a   
 
 
-
 
NC_013501  Rmar_0589  response regulator receiver modulated serine phosphatase  43.7 
 
 
371 aa  99  1e-19  Rhodothermus marinus DSM 4252  Bacteria  normal  0.420228  n/a   
 
 
-
 
NC_011830  Dhaf_1752  two component transcriptional regulator, winged helix family  41.32 
 
 
228 aa  98.6  1e-19  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000101966  n/a   
 
 
-
 
NC_010682  Rpic_1673  two component transcriptional regulator, LuxR family  43.33 
 
 
201 aa  98.2  2e-19  Ralstonia pickettii 12J  Bacteria  normal  0.619826  normal 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  42.15 
 
 
230 aa  98.2  2e-19  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_011772  BCG9842_B0458  DNA-binding response regulator  39.71 
 
 
229 aa  97.8  2e-19  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00396749 
 
 
-
 
NC_011004  Rpal_4456  PAS/PAC sensor hybrid histidine kinase  41.53 
 
 
1415 aa  97.8  2e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1409  two component signal transduction response regulator  40.68 
 
 
123 aa  97.8  2e-19  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000120114  n/a   
 
 
-
 
NC_010682  Rpic_2943  two component transcriptional regulator, LuxR family  43.33 
 
 
201 aa  98.2  2e-19  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2528  two component transcriptional regulator, LuxR family  42.5 
 
 
201 aa  97.8  2e-19  Ralstonia pickettii 12D  Bacteria  normal  normal  0.0341229 
 
 
-
 
NC_011884  Cyan7425_0981  two component transcriptional regulator, LuxR family  32.93 
 
 
221 aa  98.2  2e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.416641 
 
 
-
 
NC_013730  Slin_1735  histidine kinase  44.54 
 
 
1343 aa  98.6  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  0.260049  normal 
 
 
-
 
NC_010180  BcerKBAB4_5511  two component transcriptional regulator  44.63 
 
 
236 aa  98.2  2e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  normal  0.567595 
 
 
-
 
NC_010683  Rpic_4984  two component transcriptional regulator, LuxR family  42.5 
 
 
201 aa  97.8  2e-19  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0145131 
 
 
-
 
NC_011729  PCC7424_2881  two component transcriptional regulator, LuxR family  38.64 
 
 
212 aa  97.4  3e-19  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_3818  PAS/PAC sensor hybrid histidine kinase  44.44 
 
 
1426 aa  97.4  3e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_2399  multi-sensor signal transduction histidine kinase  41.46 
 
 
1131 aa  97.4  3e-19  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_17800  response regulator, transcriptional regulatory protein (two-component), ColR  46.61 
 
 
227 aa  97.8  3e-19  Azotobacter vinelandii DJ  Bacteria  normal  0.0435874  n/a   
 
 
-
 
NC_009972  Haur_2343  two component transcriptional regulator  45.83 
 
 
243 aa  97.4  3e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00929975  n/a   
 
 
-
 
NC_009441  Fjoh_2535  CRP/FNR family transcriptional regulator  26 
 
 
226 aa  97.1  4e-19  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_4627  two component transcriptional regulator, LuxR family  37.06 
 
 
226 aa  97.1  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_5215  two component transcriptional regulator, LuxR family  39.17 
 
 
217 aa  97.1  4e-19  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1666  ATP-binding region, ATPase-like  43.59 
 
 
1427 aa  97.1  4e-19  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.207779 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  38.35 
 
 
231 aa  97.1  5e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  36.57 
 
 
236 aa  97.1  5e-19  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_011666  Msil_1887  adenylate/guanylate cyclase  44.64 
 
 
403 aa  96.3  6e-19  Methylocella silvestris BL2  Bacteria  n/a    normal  0.522729 
 
 
-
 
NC_009708  YpsIP31758_1304  DNA-binding response regulator  45.38 
 
 
235 aa  96.3  7e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.18531  n/a   
 
 
-
 
NC_002939  GSU1102  DNA-binding response regulator  45.45 
 
 
225 aa  96.3  7e-19  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3603  DNA-binding heavy metal response regulator  44.54 
 
 
229 aa  96.3  7e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.203952  n/a   
 
 
-
 
NC_013132  Cpin_3979  two component transcriptional regulator, LuxR family  37.5 
 
 
220 aa  96.3  7e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.487116  normal  0.704163 
 
 
-
 
NC_013132  Cpin_0693  two component transcriptional regulator, winged helix family  42.62 
 
 
229 aa  96.3  7e-19  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1572  two component transcriptional regulator  45.45 
 
 
225 aa  96.3  7e-19  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000784208  n/a   
 
 
-
 
NC_008699  Noca_1748  response regulator receiver  39.67 
 
 
123 aa  96.3  7e-19  Nocardioides sp. JS614  Bacteria  normal  0.122601  n/a   
 
 
-
 
NC_013595  Sros_2955  response regulator  34.46 
 
 
199 aa  96.3  7e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2763  DNA-binding response regulator  45.38 
 
 
235 aa  96.3  7e-19  Yersinia pestis Angola  Bacteria  normal  0.0137809  hitchhiker  0.000236663 
 
 
-
 
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