Gene Vapar_1284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_1284 
Symbol 
ID7973208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp1398781 
End bp1399455 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content63% 
IMG OID644791881 
Producttranscriptional regulator, Crp/Fnr family 
Protein accessionYP_002943201 
Protein GI239814291 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.304913 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGATGC TGTCCAATCT TGAGTTGCTG CGGCGCGTTC CGCTGTTTGC CTCGCTCACG 
TCCTCGCAGT CTGCAAGCAT TGCGGATGCG ATCATCAAGA AGCGCTTCAA GCGGGCCGAA
GTCGTTGTCG AGCAGGGCAA GAAATCGGAC GCGCTCTACA TCATCCTGAC CGGACGCGCG
CGCGTGACGA GCGCCGACAA CCGCGGGCGC GAGGTGATCC TTGCCACCTT GCATCCCGGC
GACTACATCG GCGAGATGAG CCTGATCGAC GACGAGCCCC ATTCGGCCAC AGTGCGCACC
GAGATCCAGT GCGACGTACT CATGCTGGAC CGGGAAGCCT TCGCACGCTG CCTGCCCGAG
AACTCCTCGA TGGCCTACAA CATCATGCGC GGCCTGGTGC AGCGGCTGCG CCATGCCGAC
CGCAAGATCG AGTCGCTTGC GCTGATGGAC GTCTATGGGC GCGTGGCGCG CTCGCTGCTC
GAGTTCGCGA TCGACGATGG CGCAGGCAAC CTGAAGGTGC GCGACAAGAT CTCGCGCCAG
GATCTCGCGA AAATGGTGGG CGCCTCGCGC GAAATGGTGA GCCGCGTGAT GAAGGATCTC
GAGGAGCGCG GATTTGTCCA GACCCAGGAC GACGGCTCCA TGATCGTCAA GGACCGGCTC
TTGTCCCTGG CTTGA
 
Protein sequence
MSMLSNLELL RRVPLFASLT SSQSASIADA IIKKRFKRAE VVVEQGKKSD ALYIILTGRA 
RVTSADNRGR EVILATLHPG DYIGEMSLID DEPHSATVRT EIQCDVLMLD REAFARCLPE
NSSMAYNIMR GLVQRLRHAD RKIESLALMD VYGRVARSLL EFAIDDGAGN LKVRDKISRQ
DLAKMVGASR EMVSRVMKDL EERGFVQTQD DGSMIVKDRL LSLA