More than 300 homologs were found in PanDaTox collection
for query gene Jden_0916 on replicon NC_013174
Organism: Jonesia denitrificans DSM 20603



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013174  Jden_0916  transcriptional regulator, Crp/Fnr family  100 
 
 
242 aa  485  1e-136  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1838  transcriptional regulator, Crp/Fnr family  46.01 
 
 
225 aa  166  2.9999999999999998e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.0983527  n/a   
 
 
-
 
NC_012803  Mlut_09560  cAMP-binding protein  43.89 
 
 
231 aa  157  2e-37  Micrococcus luteus NCTC 2665  Bacteria  normal  0.348668  n/a   
 
 
-
 
NC_013169  Ksed_20120  cAMP-binding protein  37.39 
 
 
223 aa  141  8e-33  Kytococcus sedentarius DSM 20547  Bacteria  hitchhiker  0.00290987  normal  0.0142715 
 
 
-
 
NC_008699  Noca_1619  cyclic nucleotide-binding  40.37 
 
 
235 aa  130  3e-29  Nocardioides sp. JS614  Bacteria  normal  0.146026  n/a   
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  32.58 
 
 
230 aa  120  1.9999999999999998e-26  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  32.7 
 
 
234 aa  119  3e-26  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  34.88 
 
 
221 aa  115  6e-25  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_009012  Cthe_2775  Crp/FNR family transcriptional regulator  27.98 
 
 
232 aa  115  6e-25  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.9012  n/a   
 
 
-
 
NC_008531  LEUM_2066  Crp/FNR family transcriptional regulator  27.7 
 
 
224 aa  109  3e-23  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  0.0111986  n/a   
 
 
-
 
NC_013174  Jden_1939  transcriptional regulator, Crp/Fnr family  36.04 
 
 
235 aa  108  9.000000000000001e-23  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.45 
 
 
236 aa  101  1e-20  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_011830  Dhaf_1167  transcriptional regulator, Crp/Fnr family  25.34 
 
 
239 aa  98.6  8e-20  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000625437  n/a   
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.23 
 
 
236 aa  98.2  1e-19  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
NC_009943  Dole_2102  Crp/FNR family transcriptional regulator  32 
 
 
226 aa  94.4  2e-18  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000889631  n/a   
 
 
-
 
NC_008261  CPF_0781  Crp/FNR family transcriptional regulator  24.77 
 
 
236 aa  93.2  3e-18  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0113537  n/a   
 
 
-
 
NC_008148  Rxyl_1803  Crp/FNR family transcriptional regulator  31.98 
 
 
249 aa  93.2  4e-18  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0808632  n/a   
 
 
-
 
NC_007958  RPD_1444  Crp/Fnr family transcriptional regulator  28.19 
 
 
236 aa  92.4  6e-18  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.920255  normal 
 
 
-
 
NC_008262  CPR_0757  Crp/FNR family transcriptional regulator  24.77 
 
 
236 aa  92.4  6e-18  Clostridium perfringens SM101  Bacteria  normal  0.0100726  n/a   
 
 
-
 
NC_011884  Cyan7425_2574  transcriptional regulator, Crp/Fnr family  30.8 
 
 
236 aa  92  7e-18  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6822  Crp/FNR family transcriptional regulator  29.86 
 
 
239 aa  92  8e-18  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3945  Crp/FNR family transcriptional regulator  28.05 
 
 
240 aa  90.5  2e-17  Rhodopseudomonas palustris BisB18  Bacteria  decreased coverage  0.0000374248  normal 
 
 
-
 
NC_011004  Rpal_4621  transcriptional regulator, Crp/Fnr family  28.44 
 
 
236 aa  90.5  2e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2644  Crp/FNR family transcriptional regulator  33.48 
 
 
248 aa  89.4  4e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.446339  n/a   
 
 
-
 
NC_008527  LACR_1045  Crp-like transcriptional regulator  28.77 
 
 
229 aa  89.4  4e-17  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.000241394  n/a   
 
 
-
 
NC_009953  Sare_4620  Crp/FNR family transcriptional regulator  36.36 
 
 
237 aa  88.6  9e-17  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.128051 
 
 
-
 
NC_013223  Dret_1279  transcriptional regulator, Crp/Fnr family  31.43 
 
 
227 aa  88.2  1e-16  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0123359  normal  0.583782 
 
 
-
 
NC_008554  Sfum_3445  Crp/FNR family transcriptional regulator  32.43 
 
 
228 aa  88.2  1e-16  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.90711  unclonable  0.00000836213 
 
 
-
 
NC_012803  Mlut_18280  cAMP-binding protein  29.91 
 
 
225 aa  87  3e-16  Micrococcus luteus NCTC 2665  Bacteria  normal  0.186071  n/a   
 
 
-
 
NC_008699  Noca_1660  Crp/FNR family transcriptional regulator  32.38 
 
 
261 aa  86.3  4e-16  Nocardioides sp. JS614  Bacteria  normal  0.74426  n/a   
 
 
-
 
NC_011769  DvMF_0993  transcriptional regulator, Crp/Fnr family  33.48 
 
 
229 aa  86.3  4e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.98476 
 
 
-
 
NC_008261  CPF_1250  Crp/FNR family transcriptional regulator  24.32 
 
 
236 aa  85.9  6e-16  Clostridium perfringens ATCC 13124  Bacteria  normal  0.403908  n/a   
 
 
-
 
NC_009664  Krad_0424  putative transcriptional regulator, Crp/Fnr family  29.6 
 
 
242 aa  85.5  7e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.24952 
 
 
-
 
NC_011899  Hore_18160  putative transcriptional regulator, Crp/Fnr family  25.47 
 
 
219 aa  85.1  8e-16  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000607267  n/a   
 
 
-
 
NC_008262  CPR_1062  Crp/FNR family transcriptional regulator  24.32 
 
 
236 aa  85.1  0.000000000000001  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1491  Crp/FNR family transcriptional regulator  29.85 
 
 
224 aa  81.6  0.000000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000413534  n/a   
 
 
-
 
NC_013173  Dbac_2118  transcriptional regulator, Crp/Fnr family  30.52 
 
 
227 aa  81.3  0.00000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.545546  n/a   
 
 
-
 
NC_010320  Teth514_2386  CRP/FNR family transcriptional regulator  23.74 
 
 
225 aa  80.5  0.00000000000002  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1465  Crp/FNR family transcriptional regulator  28.71 
 
 
236 aa  80.9  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.342125  normal  0.439299 
 
 
-
 
NC_013510  Tcur_0407  transcriptional regulator, Crp/Fnr family  32.6 
 
 
243 aa  80.9  0.00000000000002  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_5808  transcriptional regulator, Crp/Fnr family  30.56 
 
 
231 aa  80.5  0.00000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.254135  normal  0.0101482 
 
 
-
 
NC_007958  RPD_1005  cyclic nucleotide-binding  27.57 
 
 
226 aa  80.1  0.00000000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.184599  normal  0.14907 
 
 
-
 
NC_012791  Vapar_1284  transcriptional regulator, Crp/Fnr family  26.76 
 
 
224 aa  79.7  0.00000000000004  Variovorax paradoxus S110  Bacteria  normal  0.304913  n/a   
 
 
-
 
NC_007778  RPB_0893  Crp/FNR family transcriptional regulator  27.4 
 
 
226 aa  77.8  0.0000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_0060  Crp/FNR family transcriptional regulator  32.13 
 
 
234 aa  78.2  0.0000000000001  Rhodoferax ferrireducens T118  Bacteria  normal  0.237094  n/a   
 
 
-
 
NC_013223  Dret_1643  transcriptional regulator, Crp/Fnr family  30.91 
 
 
227 aa  77.4  0.0000000000002  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_3038  transcriptional regulator, Crp/Fnr family  29.41 
 
 
225 aa  77  0.0000000000002  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2027  transcriptional regulator, Crp/Fnr family  24.42 
 
 
226 aa  77.4  0.0000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1971  transcriptional regulator  26.55 
 
 
237 aa  77.4  0.0000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.644199 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  23.53 
 
 
231 aa  77  0.0000000000003  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007948  Bpro_3800  Crp/FNR family transcriptional regulator  23.72 
 
 
225 aa  76.3  0.0000000000004  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_3032  Crp family transcriptional regulator  27.1 
 
 
224 aa  76.3  0.0000000000005  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0461942  normal 
 
 
-
 
NC_009513  Lreu_1425  CRP/FNR family transcriptional regulator  27.78 
 
 
212 aa  75.9  0.0000000000006  Lactobacillus reuteri DSM 20016  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0204  Crp/Fnr family transcriptional regulator  27.67 
 
 
226 aa  75.9  0.0000000000006  Thermobispora bispora DSM 43833  Bacteria  normal  0.0718939  normal 
 
 
-
 
NC_008751  Dvul_0700  CRP/FNR family transcriptional regulator  28.84 
 
 
228 aa  75.5  0.0000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.259996 
 
 
-
 
NC_013521  Sked_04890  cAMP-binding protein  28.76 
 
 
226 aa  75.1  0.0000000000008  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.84759 
 
 
-
 
NC_010524  Lcho_0755  Crp/FNR family transcriptional regulator  24.76 
 
 
222 aa  75.1  0.0000000000008  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.2571 
 
 
-
 
NC_009719  Plav_1010  CRP/FNR family transcriptional regulator  28.77 
 
 
257 aa  75.1  0.0000000000009  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4850  transcriptional regulator, Crp/Fnr family  28.21 
 
 
228 aa  75.1  0.000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_010815  Glov_3725  transcriptional regulator, Crp/Fnr family  23.83 
 
 
237 aa  75.1  0.000000000001  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0054318  normal  0.342144 
 
 
-
 
NC_013172  Bfae_24470  cAMP-binding protein  30.14 
 
 
261 aa  74.7  0.000000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  29.09 
 
 
227 aa  75.1  0.000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  27.36 
 
 
228 aa  75.1  0.000000000001  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_007413  Ava_3187  Crp/FNR family transcriptional regulator  26.5 
 
 
231 aa  74.3  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0154809 
 
 
-
 
NC_011004  Rpal_0740  transcriptional regulator, Crp/Fnr family  29.68 
 
 
255 aa  73.6  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0435  transcriptional regulator, Crp/Fnr family  24.77 
 
 
226 aa  73.9  0.000000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.376669 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.27 
 
 
225 aa  74.3  0.000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
NC_007925  RPC_1012  Crp/FNR family transcriptional regulator  29.82 
 
 
241 aa  73.9  0.000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.88102  normal  0.736744 
 
 
-
 
NC_008781  Pnap_3212  CRP/FNR family transcriptional regulator  25.35 
 
 
229 aa  74.3  0.000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.0543887  normal 
 
 
-
 
NC_008576  Mmc1_1531  Crp/FNR family transcriptional regulator  30.1 
 
 
239 aa  74.3  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  0.169257  normal 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  28.38 
 
 
225 aa  73.6  0.000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  27.69 
 
 
231 aa  73.6  0.000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_009428  Rsph17025_1951  CRP/FNR family transcriptional regulator  31.46 
 
 
263 aa  73.6  0.000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4277  Crp/FNR family transcriptional regulator  25.69 
 
 
234 aa  73.6  0.000000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_0984  Crp-like transcriptional regulator  26.76 
 
 
209 aa  73.2  0.000000000003  Lactobacillus gasseri ATCC 33323  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  27.27 
 
 
225 aa  73.6  0.000000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  24.89 
 
 
238 aa  73.2  0.000000000004  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_007794  Saro_2581  Crp/FNR family transcriptional regulator  26.84 
 
 
231 aa  72.8  0.000000000005  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.658135  n/a   
 
 
-
 
NC_011662  Tmz1t_1286  transcriptional regulator, Crp/Fnr family  28.17 
 
 
227 aa  72  0.000000000007  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2246  Crp/FNR family transcriptional regulator  25 
 
 
233 aa  72  0.000000000008  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0698  CRP/FNR family transcriptional regulator  24.77 
 
 
227 aa  72  0.000000000009  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_0117  cyclic nucleotide-binding: regulatory protein, Crp  26.55 
 
 
228 aa  71.2  0.00000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0468  putative transcriptional regulator, Crp/Fnr family  27.27 
 
 
226 aa  71.6  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.974187 
 
 
-
 
NC_009485  BBta_0559  Crp/FNR family transcriptional regulator  25.91 
 
 
225 aa  71.2  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.338488  normal  0.42035 
 
 
-
 
NC_007958  RPD_1522  cyclic nucleotide-binding  29.36 
 
 
241 aa  71.6  0.00000000001  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.500349  normal  0.967279 
 
 
-
 
NC_011146  Gbem_3406  transcriptional regulator, Crp/Fnr family  24.55 
 
 
227 aa  70.9  0.00000000002  Geobacter bemidjiensis Bem  Bacteria  normal  0.757412  n/a   
 
 
-
 
NC_009511  Swit_1945  Crp/FNR family transcriptional regulator  29 
 
 
242 aa  70.5  0.00000000002  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2076  Crp/FNR family transcriptional regulator  26.67 
 
 
234 aa  70.5  0.00000000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.398696  n/a   
 
 
-
 
NC_008825  Mpe_A1119  catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein)  24.76 
 
 
222 aa  70.5  0.00000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.106899 
 
 
-
 
NC_012918  GM21_3468  transcriptional regulator, Crp/Fnr family  24.55 
 
 
227 aa  70.5  0.00000000002  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008699  Noca_1641  cyclic nucleotide-binding  26.87 
 
 
267 aa  70.5  0.00000000002  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3421  Crp/FNR family transcriptional regulator  26.29 
 
 
241 aa  70.1  0.00000000003  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS02297  transcription regulator protein  29.59 
 
 
225 aa  70.1  0.00000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.419231 
 
 
-
 
NC_008825  Mpe_A1691  CRP/FNR family transcriptional regulator  31.53 
 
 
232 aa  70.1  0.00000000003  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00272653  normal  0.637065 
 
 
-
 
NC_009674  Bcer98_3398  CRP/FNR family transcriptional regulator  24.75 
 
 
230 aa  70.1  0.00000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_4632  CRP/FNR family transcriptional regulator  29.61 
 
 
234 aa  70.1  0.00000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0517  transcriptional regulator, Crp/Fnr family  28.5 
 
 
224 aa  70.1  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009507  Swit_5204  CRP/FNR family transcriptional regulator  28.83 
 
 
261 aa  70.1  0.00000000003  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.26828 
 
 
-
 
NC_010184  BcerKBAB4_1975  Crp/FNR family transcriptional regulator  25.41 
 
 
230 aa  70.1  0.00000000003  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_0460  Crp/FNR family transcriptional regulator  32.42 
 
 
232 aa  70.1  0.00000000003  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.884408 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>