Gene RPC_3945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3945 
Symbol 
ID3969232 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4395780 
End bp4396502 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content69% 
IMG OID637927049 
ProductCrp/FNR family transcriptional regulator 
Protein accessionYP_533790 
Protein GI90425420 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000374248 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACGG TCGACAGTTC ACTGGTGGCG GATCTGCCGC TGTTTGCCGG GCTCGCGGCT 
GCCGAACTCG ACGCCGTGCT GACCGACGCG CGTTCGGCGC GCGTCGCCAA GAACGCCGCG
GTGTTTCGTC AGGGCGACGA GGCGCAATCG TTCTACGTGC TGCTGCACGG TCACGTCCGC
GCCAGCAAGA CCACGGCGGG CGGCGAGCAG GTGGTGGTGC GTTACGTCAG CCCCGGCGAA
ACTTTTGGCG TGGCGATGGC GATCGGGTTG CAGCGCTATC CGGCGACCGC GACCGCGGTC
GAGGAATCCG TCGTGCTGGC CTGGCCGGCG GCGAGCTGGC CGCGCCTCGT CGAGCGCTTT
CCGCAGCTCG CCACCAACAC CTTGCGCAGC GTCGGCAGCC GGCTGCAGGA GACCCACACC
CGGGTGGTCG AGATGTCGAC CCAACAGGTC GAGCAGCGCA TCGCGCACGC GCTGTTGCGG
CTCGCCAAGC AGGCCGGCCG CAAGGTGGAG AACGGCGTCG AGATCGCGTT CCCGATCAGC
CGGCAGGACA TCGCGCAGAT GACCGGCTCG ACGCTGCATA CGGTGAGCCG GCTGCTCTCC
AGCTGGGAAA GCCGCGGCCT GATCGAGAGC GGCCGGCAGC GCATCGTGTT GCGCGATCCG
CACGGCTTGG TGCTGCTGTC CGAGCAGGTT CCGGGCGACA TCGAGCCGGC GAAGAAAATC
TAG
 
Protein sequence
MPTVDSSLVA DLPLFAGLAA AELDAVLTDA RSARVAKNAA VFRQGDEAQS FYVLLHGHVR 
ASKTTAGGEQ VVVRYVSPGE TFGVAMAIGL QRYPATATAV EESVVLAWPA ASWPRLVERF
PQLATNTLRS VGSRLQETHT RVVEMSTQQV EQRIAHALLR LAKQAGRKVE NGVEIAFPIS
RQDIAQMTGS TLHTVSRLLS SWESRGLIES GRQRIVLRDP HGLVLLSEQV PGDIEPAKKI